6 items (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC110971509	Uncharacterized protein. (625 aa)
	c6	Uncharacterized protein. (939 aa)
	LOC110957195	Complement component 7b. (832 aa)
	agrn	Agrin. (2026 aa)
	LOC110949280	Complement component 7a. (788 aa)
	LOC110971507	Uncharacterized protein. (564 aa)

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110949280	LOC110957195	ENSAPOP00000009583	ENSAPOP00000015576	Complement component 7a.	Complement component 7b.	0.554
LOC110949280	c6	ENSAPOP00000009583	ENSAPOP00000015577	Complement component 7a.	Uncharacterized protein.	0.761
LOC110957195	LOC110949280	ENSAPOP00000015576	ENSAPOP00000009583	Complement component 7b.	Complement component 7a.	0.554
LOC110957195	c6	ENSAPOP00000015576	ENSAPOP00000015577	Complement component 7b.	Uncharacterized protein.	0.761
c6	LOC110949280	ENSAPOP00000015577	ENSAPOP00000009583	Uncharacterized protein.	Complement component 7a.	0.761
c6	LOC110957195	ENSAPOP00000015577	ENSAPOP00000015576	Uncharacterized protein.	Complement component 7b.	0.761