(24 nodes) LSM domain superfamily network (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	lsm14a	LSM14A mRNA processing body assembly factor b. (446 aa)
	LOC110966072	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (183 aa)
	ENSAPOP00000029533	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (116 aa)
	ENSAPOP00000026308	LSM14 domain-containing protein. (108 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	naa38	N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (112 aa)
	ENSAPOP00000023687	Sm domain-containing protein. (96 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (151 aa)
	ENSAPOP00000022281	Small nuclear ribonucleoprotein polypeptide F. (128 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	snrpb	Small nuclear ribonucleoprotein polypeptides B and B1. (427 aa)
	lsm3	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (150 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (109 aa)
	LOC110946918	Small nuclear ribonucleoprotein G. (77 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
	lsm1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (157 aa)
	LOC110972903	LSM11, U7 small nuclear RNA associated. (336 aa)
	LOC110959242	Small nuclear ribonucleoprotein G. (132 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	LOC110966521	LSM14A mRNA processing body assembly factor a. (451 aa)
	LOC110970239	LSM family member 14B. (367 aa)

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000022281	ENSAPOP00000023687	ENSAPOP00000022281	ENSAPOP00000023687	Small nuclear ribonucleoprotein polypeptide F.	Sm domain-containing protein.	0.999
ENSAPOP00000022281	ENSAPOP00000029533	ENSAPOP00000022281	ENSAPOP00000029533	Small nuclear ribonucleoprotein polypeptide F.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995
ENSAPOP00000022281	LOC110946918	ENSAPOP00000022281	ENSAPOP00000010747	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein G.	0.999
ENSAPOP00000022281	LOC110959242	ENSAPOP00000022281	ENSAPOP00000007157	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein G.	0.999
ENSAPOP00000022281	LOC110966072	ENSAPOP00000022281	ENSAPOP00000032675	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.991
ENSAPOP00000022281	LOC110972903	ENSAPOP00000022281	ENSAPOP00000008209	Small nuclear ribonucleoprotein polypeptide F.	LSM11, U7 small nuclear RNA associated.	0.830
ENSAPOP00000022281	LSM5	ENSAPOP00000022281	ENSAPOP00000009442	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.991
ENSAPOP00000022281	lsm1	ENSAPOP00000022281	ENSAPOP00000008657	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.866
ENSAPOP00000022281	lsm2	ENSAPOP00000022281	ENSAPOP00000015034	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
ENSAPOP00000022281	lsm3	ENSAPOP00000022281	ENSAPOP00000015886	Small nuclear ribonucleoprotein polypeptide F.	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.994
ENSAPOP00000022281	lsm4	ENSAPOP00000022281	ENSAPOP00000023667	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.988
ENSAPOP00000022281	lsm6	ENSAPOP00000022281	ENSAPOP00000016709	Small nuclear ribonucleoprotein polypeptide F.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.989
ENSAPOP00000022281	lsm8	ENSAPOP00000022281	ENSAPOP00000006781	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.995
ENSAPOP00000022281	naa38	ENSAPOP00000022281	ENSAPOP00000023691	Small nuclear ribonucleoprotein polypeptide F.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.986
ENSAPOP00000022281	snrpb	ENSAPOP00000022281	ENSAPOP00000016502	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein polypeptides B and B1.	0.997
ENSAPOP00000022281	snrpd1	ENSAPOP00000022281	ENSAPOP00000031903	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
ENSAPOP00000022281	snrpd2	ENSAPOP00000022281	ENSAPOP00000027637	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D2.	0.999
ENSAPOP00000022281	snrpd3	ENSAPOP00000022281	ENSAPOP00000024826	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSAPOP00000022281	snrpe	ENSAPOP00000022281	ENSAPOP00000020517	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
ENSAPOP00000023687	ENSAPOP00000022281	ENSAPOP00000023687	ENSAPOP00000022281	Sm domain-containing protein.	Small nuclear ribonucleoprotein polypeptide F.	0.999