15 items (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC110949617	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family. (296 aa)
	LOC110955582	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family. (193 aa)
	ripk2	Receptor-interacting serine-threonine kinase 2. (610 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (318 aa)
	LOC110962300	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (309 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (743 aa)
	irak1	Protein kinase domain-containing protein. (557 aa)
	ngfr	Nerve growth factor receptor b. (435 aa)
	sqstm1	Sequestosome 1. (407 aa)
	LOC110952577	Nerve growth factor receptor a (TNFR superfamily, member 16). (310 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (571 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (288 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	prkci	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (557 aa)

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110949617	LOC110952577	ENSAPOP00000015508	ENSAPOP00000016088	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.993
LOC110949617	LOC110955582	ENSAPOP00000015508	ENSAPOP00000013312	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.	0.824
LOC110949617	LOC110962300	ENSAPOP00000015508	ENSAPOP00000004816	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.568
LOC110949617	ikbkb	ENSAPOP00000015508	ENSAPOP00000003614	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.614
LOC110949617	irak1	ENSAPOP00000015508	ENSAPOP00000001403	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Protein kinase domain-containing protein.	0.681
LOC110949617	myd88	ENSAPOP00000015508	ENSAPOP00000034807	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.669
LOC110949617	nfkbia	ENSAPOP00000015508	ENSAPOP00000007038	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.568
LOC110949617	ngfr	ENSAPOP00000015508	ENSAPOP00000018839	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor receptor b.	0.984
LOC110949617	prkci	ENSAPOP00000015508	ENSAPOP00000015607	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.639
LOC110949617	ripk2	ENSAPOP00000015508	ENSAPOP00000012241	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Receptor-interacting serine-threonine kinase 2.	0.711
LOC110949617	traf6	ENSAPOP00000015508	ENSAPOP00000024104	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.654
LOC110952577	LOC110949617	ENSAPOP00000016088	ENSAPOP00000015508	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	0.993
LOC110952577	LOC110962300	ENSAPOP00000016088	ENSAPOP00000004816	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.572
LOC110952577	ikbkb	ENSAPOP00000016088	ENSAPOP00000003614	Nerve growth factor receptor a (TNFR superfamily, member 16).	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.727
LOC110952577	irak1	ENSAPOP00000016088	ENSAPOP00000001403	Nerve growth factor receptor a (TNFR superfamily, member 16).	Protein kinase domain-containing protein.	0.900
LOC110952577	myd88	ENSAPOP00000016088	ENSAPOP00000034807	Nerve growth factor receptor a (TNFR superfamily, member 16).	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.752
LOC110952577	nfkbia	ENSAPOP00000016088	ENSAPOP00000007038	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.572
LOC110952577	ngfr	ENSAPOP00000016088	ENSAPOP00000018839	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nerve growth factor receptor b.	0.912
LOC110952577	prkci	ENSAPOP00000016088	ENSAPOP00000015607	Nerve growth factor receptor a (TNFR superfamily, member 16).	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.709
LOC110952577	ripk2	ENSAPOP00000016088	ENSAPOP00000012241	Nerve growth factor receptor a (TNFR superfamily, member 16).	Receptor-interacting serine-threonine kinase 2.	0.985