50 items (Acanthochromis polyacanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC110962034	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1036 aa)
	LOC110962557	Cyclin D binding myb-like transcription factor 1. (661 aa)
	mis18bp1	SANT domain-containing protein. (1100 aa)
	ezh2	Enhancer of zeste 2 polycomb repressive complex 2 subunit. (761 aa)
	ncor1	Nuclear receptor corepressor 1. (2407 aa)
	tada2a	Transcriptional adapter. (445 aa)
	terf1	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (364 aa)
	mier3	Mesoderm induction early response 1, family member 3 b. (584 aa)
	ep400	E1A binding protein p400. (2977 aa)
	mta1	Metastasis associated 1. (619 aa)
	LOC110953254	Chromodomain helicase DNA binding protein 8. (2468 aa)
	LOC110960230	ELM2 and Myb/SANT-like domain containing 1a. (1068 aa)
	tada2b	Transcriptional adapter. (527 aa)
	LOC110965599	Mesoderm induction early response 1, family member 2. (480 aa)
	mta2	Metastasis associated 1 family, member 2. (663 aa)
	LOC110962732	Uncharacterized protein. (1071 aa)
	LOC110953948	Aminotran_1_2 domain-containing protein. (975 aa)
	cdc5l	CDC5 cell division cycle 5-like (S. pombe). (812 aa)
	LOC110955784	Chromodomain helicase DNA binding protein 7. (2872 aa)
	rcor2	REST corepressor 2. (348 aa)
	rcor1	REST corepressor 1. (459 aa)
	LOC110957003	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b. (880 aa)
	LOC110954604	ELM2 and Myb/SANT-like domain containing 1b. (1114 aa)
	EZH1	Enhancer of zeste 1 polycomb repressive complex 2 subunit. (772 aa)
	terf2	HTH myb-type domain-containing protein. (644 aa)
	ncor2	Nuclear receptor corepressor 2. (1837 aa)
	dnajc1	DnaJ (Hsp40) homolog, subfamily C, member 1. (552 aa)
	bdp1	SANT domain-containing protein. (2223 aa)
	dnajc2	DnaJ (Hsp40) homolog, subfamily C, member 2. (618 aa)
	mier1	Mesoderm induction early response 1b, transcriptional regulator. (533 aa)
	zzz3	Zinc finger, ZZ-type containing 3. (863 aa)
	LOC110962055	REST corepressor 3. (505 aa)
	dmap1	DNA methyltransferase 1 associated protein 1. (484 aa)
	smarcc1	Uncharacterized protein. (1132 aa)
	LOC110946888	Uncharacterized protein. (215 aa)
	cramp1	Cramped chromatin regulator homolog 1. (933 aa)
	myb	V-myb avian myeloblastosis viral oncogene homolog. (596 aa)
	LOC110963723	Arginine-glutamic acid dipeptide (RE) repeats b. (1135 aa)
	LOC110958976	Si:dkey-27c15.3. (1311 aa)
	mysm1	Myb-like, SWIRM and MPN domains 1. (872 aa)
	smarcc2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2. (1047 aa)
	LOC110955442	Uncharacterized protein. (458 aa)
	ENSAPOP00000033495	Telomere repeat binding bouquet formation protein 1. (513 aa)
	LOC110948364	Metastasis associated 1 family, member 3. (700 aa)
	mybl2	V-myb avian myeloblastosis viral oncogene homolog-like 2b. (524 aa)
	LOC110961253	AIRC domain-containing protein. (1100 aa)
	rere	Arginine-glutamic acid dipeptide (RE) repeats a. (1578 aa)
	mybl1	V-myb avian myeloblastosis viral oncogene homolog-like 1. (751 aa)
	ENSAPOP00000014665	Uncharacterized protein. (252 aa)
	LOC110956771	Uncharacterized protein. (884 aa)

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000033495	terf1	ENSAPOP00000033495	ENSAPOP00000001679	Telomere repeat binding bouquet formation protein 1.	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	0.960
ENSAPOP00000033495	terf2	ENSAPOP00000033495	ENSAPOP00000023863	Telomere repeat binding bouquet formation protein 1.	HTH myb-type domain-containing protein.	0.543
EZH1	LOC110962034	ENSAPOP00000034037	ENSAPOP00000013176	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.716
EZH1	LOC110962055	ENSAPOP00000034037	ENSAPOP00000028655	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	REST corepressor 3.	0.470
EZH1	LOC110962732	ENSAPOP00000034037	ENSAPOP00000026644	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	Uncharacterized protein.	0.474
EZH1	ep400	ENSAPOP00000034037	ENSAPOP00000002602	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	E1A binding protein p400.	0.480
EZH1	ncor1	ENSAPOP00000034037	ENSAPOP00000000887	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	Nuclear receptor corepressor 1.	0.460
EZH1	ncor2	ENSAPOP00000034037	ENSAPOP00000022658	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	Nuclear receptor corepressor 2.	0.453
EZH1	rcor1	ENSAPOP00000034037	ENSAPOP00000024918	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	REST corepressor 1.	0.470
EZH1	rcor2	ENSAPOP00000034037	ENSAPOP00000025591	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	REST corepressor 2.	0.470
LOC110948364	LOC110953254	ENSAPOP00000021374	ENSAPOP00000012688	Metastasis associated 1 family, member 3.	Chromodomain helicase DNA binding protein 8.	0.565
LOC110948364	LOC110955442	ENSAPOP00000021374	ENSAPOP00000033266	Metastasis associated 1 family, member 3.	Uncharacterized protein.	0.410
LOC110948364	LOC110955784	ENSAPOP00000021374	ENSAPOP00000025837	Metastasis associated 1 family, member 3.	Chromodomain helicase DNA binding protein 7.	0.565
LOC110948364	LOC110962034	ENSAPOP00000021374	ENSAPOP00000013176	Metastasis associated 1 family, member 3.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.618
LOC110948364	LOC110962055	ENSAPOP00000021374	ENSAPOP00000028655	Metastasis associated 1 family, member 3.	REST corepressor 3.	0.610
LOC110948364	ep400	ENSAPOP00000021374	ENSAPOP00000002602	Metastasis associated 1 family, member 3.	E1A binding protein p400.	0.565
LOC110948364	rcor1	ENSAPOP00000021374	ENSAPOP00000024918	Metastasis associated 1 family, member 3.	REST corepressor 1.	0.610
LOC110948364	rcor2	ENSAPOP00000021374	ENSAPOP00000025591	Metastasis associated 1 family, member 3.	REST corepressor 2.	0.610
LOC110953254	LOC110948364	ENSAPOP00000012688	ENSAPOP00000021374	Chromodomain helicase DNA binding protein 8.	Metastasis associated 1 family, member 3.	0.565
LOC110953254	LOC110955442	ENSAPOP00000012688	ENSAPOP00000033266	Chromodomain helicase DNA binding protein 8.	Uncharacterized protein.	0.506