(8 nodes) Phosphoserine residue binding network (Amphiprion ocellaris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCAF8	SR-related CTD associated factor 8. (1417 aa)
	pin1	Peptidyl-prolyl cis-trans isomerase. (156 aa)
	LOC111575123	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family. (257 aa)
	scaf4	SR-related CTD-associated factor 4a. (1116 aa)
	leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (646 aa)
	rtf1	RTF1 homolog, Paf1/RNA polymerase II complex component. (677 aa)
	LOC111562703	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (261 aa)
	LOC111563697	SR-related CTD-associated factor 4b. (754 aa)

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111562703	LOC111575123	ENSAOCP00000019629	ENSAOCP00000027655	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	0.901
LOC111575123	LOC111562703	ENSAOCP00000027655	ENSAOCP00000019629	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.901
leo1	rtf1	ENSAOCP00000007306	ENSAOCP00000009962	LEO1 homolog, Paf1/RNA polymerase II complex component.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.999
rtf1	leo1	ENSAOCP00000009962	ENSAOCP00000007306	RTF1 homolog, Paf1/RNA polymerase II complex component.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999