STRINGSTRING
Hmga2 Hmga2 fgf4 fgf4 ptprc ptprc atxn1l atxn1l pdcd2 pdcd2 sirt6 sirt6 ENSAOCP00000019290 ENSAOCP00000019290 vegfc vegfc ENSAOCP00000023867 ENSAOCP00000023867 kdm1a kdm1a LOC111581736 LOC111581736
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Hmga2High mobility group AT-hook 2. (135 aa)
fgf4Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (188 aa)
ptprcProtein tyrosine phosphatase receptor type C. (1174 aa)
atxn1lAtaxin 1-like. (837 aa)
pdcd2Programmed cell death 2. (395 aa)
sirt6Sirtuin 6. (349 aa)
ENSAOCP00000019290Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (188 aa)
vegfcVascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family. (422 aa)
ENSAOCP00000023867Uncharacterized protein. (90 aa)
kdm1aLysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (855 aa)
LOC111581736Transforming growth factor beta; Belongs to the TGF-beta family. (384 aa)
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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