(28 nodes) Inclusion body network (Amphiprion ocellaris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAOCP00000031443	Caspase recruitment domain family, member 14. (802 aa)
	LOC111589040	HERPUD family member 2. (416 aa)
	LOC111580825	Beta-synuclein; Belongs to the synuclein family. (117 aa)
	LOC111563141	Aminotran_1_2 domain-containing protein. (535 aa)
	LOC111571686	Uncharacterized protein. (561 aa)
	klhl14	Kelch-like family member 14. (605 aa)
	tardbp	TAR DNA binding protein, like. (298 aa)
	pabpn1	Poly(A) binding protein, nuclear 1. (232 aa)
	slf1	SMC5-SMC6 complex localization factor 1. (879 aa)
	htt	Huntingtin. (3065 aa)
	LOC111582902	Kelch-like ECH-associated protein 1a. (601 aa)
	arih1	RBR-type E3 ubiquitin transferase. (529 aa)
	herpud1	Homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1. (377 aa)
	stub1	STIP1 homology and U-Box containing protein 1. (284 aa)
	LOC111570316	Ataxin 1b. (821 aa)
	LOC111588743	AXH domain-containing protein. (685 aa)
	rnf32	Ring finger protein 32. (355 aa)
	fbxo7	F-box protein 7. (503 aa)
	LOC111569695	Ubiquitin-like domain-containing protein. (379 aa)
	LOC111578905	Ataxin 3. (354 aa)
	nup153	Nucleoporin 153. (1449 aa)
	cabin1	Calcineurin binding protein 1. (2228 aa)
	miox	Myo-inositol oxygenase. (286 aa)
	keap1	Kelch-like ECH-associated protein 1b. (618 aa)
	LOC111579909	TAR DNA binding protein. (402 aa)
	trim37	Tripartite motif containing 37. (952 aa)
	STUB1	STIP1 homology and U-box containing protein 1. (254 aa)
	atxn1	Ataxin 1a. (815 aa)

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111570316	LOC111578905	ENSAOCP00000015006	ENSAOCP00000003005	Ataxin 1b.	Ataxin 3.	0.434
LOC111570316	htt	ENSAOCP00000015006	ENSAOCP00000001390	Ataxin 1b.	Huntingtin.	0.418
LOC111578905	LOC111570316	ENSAOCP00000003005	ENSAOCP00000015006	Ataxin 3.	Ataxin 1b.	0.434
LOC111578905	LOC111588743	ENSAOCP00000003005	ENSAOCP00000021776	Ataxin 3.	AXH domain-containing protein.	0.434
LOC111578905	STUB1	ENSAOCP00000003005	ENSAOCP00000007252	Ataxin 3.	STIP1 homology and U-box containing protein 1.	0.702
LOC111578905	atxn1	ENSAOCP00000003005	ENSAOCP00000011497	Ataxin 3.	Ataxin 1a.	0.434
LOC111578905	htt	ENSAOCP00000003005	ENSAOCP00000001390	Ataxin 3.	Huntingtin.	0.650
LOC111578905	stub1	ENSAOCP00000003005	ENSAOCP00000012209	Ataxin 3.	STIP1 homology and U-Box containing protein 1.	0.798
LOC111579909	htt	ENSAOCP00000006538	ENSAOCP00000001390	TAR DNA binding protein.	Huntingtin.	0.553
LOC111579909	pabpn1	ENSAOCP00000006538	ENSAOCP00000011500	TAR DNA binding protein.	Poly(A) binding protein, nuclear 1.	0.467
LOC111579909	tardbp	ENSAOCP00000006538	ENSAOCP00000015447	TAR DNA binding protein.	TAR DNA binding protein, like.	0.901
LOC111582902	keap1	ENSAOCP00000011598	ENSAOCP00000005977	Kelch-like ECH-associated protein 1a.	Kelch-like ECH-associated protein 1b.	0.902
LOC111588743	LOC111578905	ENSAOCP00000021776	ENSAOCP00000003005	AXH domain-containing protein.	Ataxin 3.	0.434
LOC111588743	htt	ENSAOCP00000021776	ENSAOCP00000001390	AXH domain-containing protein.	Huntingtin.	0.418
STUB1	LOC111578905	ENSAOCP00000007252	ENSAOCP00000003005	STIP1 homology and U-box containing protein 1.	Ataxin 3.	0.702
arih1	pabpn1	ENSAOCP00000027730	ENSAOCP00000011500	RBR-type E3 ubiquitin transferase.	Poly(A) binding protein, nuclear 1.	0.445
atxn1	LOC111578905	ENSAOCP00000011497	ENSAOCP00000003005	Ataxin 1a.	Ataxin 3.	0.434
atxn1	htt	ENSAOCP00000011497	ENSAOCP00000001390	Ataxin 1a.	Huntingtin.	0.418
htt	LOC111570316	ENSAOCP00000001390	ENSAOCP00000015006	Huntingtin.	Ataxin 1b.	0.418
htt	LOC111578905	ENSAOCP00000001390	ENSAOCP00000003005	Huntingtin.	Ataxin 3.	0.650