(40 nodes) Matrin/U1-C-like, C2H2-type zinc finger network (Amphiprion ocellaris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	znf385d	Zinc finger protein 385D. (439 aa)
	zmat2	Zinc finger, matrin-type 2. (201 aa)
	LOC111579345	Uncharacterized protein. (1622 aa)
	dnajc21	DnaJ heat shock protein family (Hsp40) member C21. (539 aa)
	znf593	Zinc finger protein 593. (129 aa)
	sf3a3	Splicing factor 3a, subunit 3. (501 aa)
	znf385c	Zinc finger protein 385C. (427 aa)
	ENSAOCP00000008272	Zgc:171482. (136 aa)
	LOC111578328	Zinc finger, matrin-type 4b. (260 aa)
	znf236	Zinc finger protein 236. (1669 aa)
	LOC111570899	Uncharacterized protein. (3325 aa)
	LOC111566726	Uncharacterized protein. (649 aa)
	snrpc	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (148 aa)
	RBM20	RNA binding motif protein 20. (1129 aa)
	zmat3	Zinc finger, matrin-type 3. (495 aa)
	znf622	Zinc finger protein 622. (465 aa)
	ENSAOCP00000012305	U1-type domain-containing protein. (105 aa)
	ENSAOCP00000003860	Uncharacterized protein. (397 aa)
	LOC111563084	Matrin-type domain-containing protein. (1595 aa)
	znf326	Uncharacterized protein; Belongs to the AKAP95 family. (431 aa)
	LOC111568567	Uncharacterized protein. (417 aa)
	wbp4	Uncharacterized protein. (428 aa)
	zmat5	Zinc finger, matrin-type 5. (174 aa)
	scaper	S-phase cyclin A-associated protein in the ER. (1500 aa)
	ZNF385D	Zinc finger protein 385D. (390 aa)
	LOC111582559	Zinc finger protein 346. (302 aa)
	LOC111581200	Uncharacterized protein. (609 aa)
	zfhx4	Zinc finger homeobox 4. (3576 aa)
	ZNF830	Zinc finger protein 830. (344 aa)
	hivep1	Human immunodeficiency virus type I enhancer binding protein 1. (2621 aa)
	LOC111569099	Uncharacterized protein. (1098 aa)
	LOC111569101	Uncharacterized protein. (985 aa)
	ENSAOCP00000017378	Uncharacterized protein. (369 aa)
	LOC111587252	Zinc finger protein 385A. (442 aa)
	zfr	Zinc finger RNA binding protein. (1047 aa)
	ciz1	Cdkn1a interacting zinc finger protein 1a. (768 aa)
	sf3a2	Splicing factor 3a, subunit 2. (304 aa)
	ENSAOCP00000028611	Uncharacterized protein. (1868 aa)
	LOC111585938	Zinc finger RNA binding protein 2. (690 aa)
	tut1	Terminal uridylyl transferase 1, U6 snRNA-specific. (800 aa)

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000028611	sf3a2	ENSAOCP00000028611	ENSAOCP00000027203	Uncharacterized protein.	Splicing factor 3a, subunit 2.	0.433
ENSAOCP00000028611	sf3a3	ENSAOCP00000028611	ENSAOCP00000009746	Uncharacterized protein.	Splicing factor 3a, subunit 3.	0.490
ENSAOCP00000028611	snrpc	ENSAOCP00000028611	ENSAOCP00000016262	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.602
ENSAOCP00000028611	zmat5	ENSAOCP00000028611	ENSAOCP00000019533	Uncharacterized protein.	Zinc finger, matrin-type 5.	0.602
dnajc21	znf622	ENSAOCP00000010262	ENSAOCP00000002536	DnaJ heat shock protein family (Hsp40) member C21.	Zinc finger protein 622.	0.712
sf3a2	ENSAOCP00000028611	ENSAOCP00000027203	ENSAOCP00000028611	Splicing factor 3a, subunit 2.	Uncharacterized protein.	0.433
sf3a2	sf3a3	ENSAOCP00000027203	ENSAOCP00000009746	Splicing factor 3a, subunit 2.	Splicing factor 3a, subunit 3.	0.999
sf3a2	snrpc	ENSAOCP00000027203	ENSAOCP00000016262	Splicing factor 3a, subunit 2.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.932
sf3a2	wbp4	ENSAOCP00000027203	ENSAOCP00000019436	Splicing factor 3a, subunit 2.	Uncharacterized protein.	0.729
sf3a2	zmat2	ENSAOCP00000027203	ENSAOCP00000011889	Splicing factor 3a, subunit 2.	Zinc finger, matrin-type 2.	0.955
sf3a2	zmat5	ENSAOCP00000027203	ENSAOCP00000019533	Splicing factor 3a, subunit 2.	Zinc finger, matrin-type 5.	0.710
sf3a3	ENSAOCP00000028611	ENSAOCP00000009746	ENSAOCP00000028611	Splicing factor 3a, subunit 3.	Uncharacterized protein.	0.490
sf3a3	sf3a2	ENSAOCP00000009746	ENSAOCP00000027203	Splicing factor 3a, subunit 3.	Splicing factor 3a, subunit 2.	0.999
sf3a3	snrpc	ENSAOCP00000009746	ENSAOCP00000016262	Splicing factor 3a, subunit 3.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.953
sf3a3	wbp4	ENSAOCP00000009746	ENSAOCP00000019436	Splicing factor 3a, subunit 3.	Uncharacterized protein.	0.791
sf3a3	zmat2	ENSAOCP00000009746	ENSAOCP00000011889	Splicing factor 3a, subunit 3.	Zinc finger, matrin-type 2.	0.935
sf3a3	zmat5	ENSAOCP00000009746	ENSAOCP00000019533	Splicing factor 3a, subunit 3.	Zinc finger, matrin-type 5.	0.918
snrpc	ENSAOCP00000028611	ENSAOCP00000016262	ENSAOCP00000028611	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	Uncharacterized protein.	0.602
snrpc	sf3a2	ENSAOCP00000016262	ENSAOCP00000027203	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	Splicing factor 3a, subunit 2.	0.932
snrpc	sf3a3	ENSAOCP00000016262	ENSAOCP00000009746	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	Splicing factor 3a, subunit 3.	0.953