(26 nodes) Sm domain network (Amphiprion ocellaris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	atxn2	Ataxin 2. (1053 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (155 aa)
	LOC111578296	LSM14A mRNA processing body assembly factor a. (493 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	LSM14B	LSM family member 14B. (386 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	LSM10-2	LSM10, U7 small nuclear RNA associated. (121 aa)
	lsm12	LSM12 homolog b. (224 aa)
	ENSAOCP00000027008	Sm domain-containing protein. (129 aa)
	Snrpf	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (132 aa)
	lsm11	LSM11, U7 small nuclear RNA associated. (336 aa)
	LOC111582252	Small nuclear ribonucleoprotein Sm D3. (108 aa)
	LOC111587986	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	LOC111572269	LSM14A mRNA processing body assembly factor b. (446 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	naa38	N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (112 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (148 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (121 aa)
	LOC111570505	LSM family member 14B. (367 aa)

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000027008	LOC111582252	ENSAOCP00000027008	ENSAOCP00000012329	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.873
ENSAOCP00000027008	SNRPD3	ENSAOCP00000027008	ENSAOCP00000005047	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.873
ENSAOCP00000027008	Snrpf	ENSAOCP00000027008	ENSAOCP00000010880	Sm domain-containing protein.	Small nuclear ribonucleoprotein polypeptide F.	0.985
ENSAOCP00000027008	lsm11	ENSAOCP00000027008	ENSAOCP00000011301	Sm domain-containing protein.	LSM11, U7 small nuclear RNA associated.	0.779
ENSAOCP00000027008	lsm12	ENSAOCP00000027008	ENSAOCP00000030702	Sm domain-containing protein.	LSM12 homolog b.	0.431
ENSAOCP00000027008	lsm2	ENSAOCP00000027008	ENSAOCP00000021866	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.909
ENSAOCP00000027008	lsm3	ENSAOCP00000027008	ENSAOCP00000004261	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.801
ENSAOCP00000027008	lsm4	ENSAOCP00000027008	ENSAOCP00000021542	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.893
ENSAOCP00000027008	lsm5	ENSAOCP00000027008	ENSAOCP00000017403	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.866
ENSAOCP00000027008	lsm6	ENSAOCP00000027008	ENSAOCP00000000258	Sm domain-containing protein.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.888
ENSAOCP00000027008	lsm7	ENSAOCP00000027008	ENSAOCP00000011290	Sm domain-containing protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.906
ENSAOCP00000027008	lsm8	ENSAOCP00000027008	ENSAOCP00000009751	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.897
ENSAOCP00000027008	naa38	ENSAOCP00000027008	ENSAOCP00000018641	Sm domain-containing protein.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.883
ENSAOCP00000027008	snrpb	ENSAOCP00000027008	ENSAOCP00000003581	Sm domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.870
ENSAOCP00000027008	snrpd1	ENSAOCP00000027008	ENSAOCP00000004035	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.440
ENSAOCP00000027008	snrpd2	ENSAOCP00000027008	ENSAOCP00000019174	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.977
ENSAOCP00000027008	snrpe	ENSAOCP00000027008	ENSAOCP00000018218	Sm domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.974
ENSAOCP00000027008	snrpg	ENSAOCP00000027008	ENSAOCP00000003202	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.976
LOC111570505	LOC111587986	ENSAOCP00000025060	ENSAOCP00000012594	LSM family member 14B.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.419
LOC111570505	lsm2	ENSAOCP00000025060	ENSAOCP00000021866	LSM family member 14B.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.461