109 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I3IUQ0_ORENI	ISY1 splicing factor homolog. (250 aa)
	LOC100703771	DEAH (Asp-Glu-Ala-His) box polypeptide 32b. (745 aa)
	snw1	SNW domain containing 1. (536 aa)
	yju2	YJU2 splicing factor homolog. (344 aa)
	LOC100702978	Src homology 2 domain containing transforming protein D, a. (406 aa)
	I3J129_ORENI	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (184 aa)
	dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1055 aa)
	sf3b4	Splicing factor 3b, subunit 4. (421 aa)
	ccdc12	Coiled-coil domain containing 12. (163 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	cwc25	CWC25 spliceosome associated protein homolog. (403 aa)
	WDR25	WD repeat domain 25. (503 aa)
	snrpa	Small nuclear ribonucleoprotein polypeptide A. (282 aa)
	lg14h19orf54	Zgc:153119. (298 aa)
	wdr53	WD repeat domain 53. (386 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	bud13	BUD13 homolog. (596 aa)
	daw1	WD_REPEATS_REGION domain-containing protein. (415 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (482 aa)
	snrpb2	Small nuclear ribonucleoprotein polypeptide B2. (218 aa)
	I3JML8_ORENI	RNA binding motif protein 42. (377 aa)
	prpf8	Pre-mRNA processing factor 8. (2350 aa)
	srrm1	Serine/arginine repetitive matrix 1. (867 aa)
	ctnnbl1	Catenin, beta like 1. (577 aa)
	bcas2	BCAS2 pre-mRNA processing factor. (225 aa)
	pprc1	PPARG related coactivator 1. (1336 aa)
	cd2bp2	CD2 (cytoplasmic tail) binding protein 2. (375 aa)
	sf3a3	Splicing factor 3a, subunit 3. (501 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2136 aa)
	sf3a1	Splicing factor 3a, subunit 1. (785 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	Snrpa1	Small nuclear ribonucleoprotein polypeptide A. (291 aa)
	dqx1	DEAQ box RNA-dependent ATPase 1. (817 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (523 aa)
	SRRM3	Serine/arginine repetitive matrix protein 3 isoform X1. (647 aa)
	rbm22	RNA binding motif protein 22. (427 aa)
	sf3b2	Splicing factor 3b, subunit 2. (871 aa)
	rbm41	RNA binding motif protein 41. (449 aa)
	usp39	Ubiquitin specific peptidase 39. (501 aa)
	cdc40	Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1311 aa)
	Zmat5	Zinc finger, matrin-type 5. (175 aa)
	WDR70	WD repeat domain 70. (651 aa)
	ppil1	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (202 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (482 aa)
	snrnp27	Small nuclear ribonucleoprotein 27 (U4/U6.U5). (160 aa)
	SNIP1	Smad nuclear interacting protein 1. (376 aa)
	LOC100712087	Uncharacterized protein. (182 aa)
	gpkow	G patch domain and KOW motifs. (559 aa)
	ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1181 aa)
	lsm11	LSM11, U7 small nuclear RNA associated. (338 aa)
	parpbp	PARP1 binding protein. (610 aa)
	dhx8	DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1213 aa)
	lrmda	Leucine rich melanocyte differentiation associated. (233 aa)
	I3KV64_ORENI	Uncharacterized protein. (196 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (121 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (769 aa)
	snrnp35	Small nuclear ribonucleoprotein 35 (U11/U12). (237 aa)
	ZNF830	Zinc finger protein 830. (451 aa)
	slu7	SLU7 homolog, splicing factor. (570 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (711 aa)
	ppwd1	Peptidylprolyl isomerase domain and WD repeat containing 1. (643 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (1070 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	ENSONIP00000038061	annotation not available (358 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (834 aa)
	LOC100706293	Leucine rich repeat containing 51. (263 aa)
	ENSONIP00000040643	CWF19 like cell cycle control factor 2. (788 aa)
	ppil3	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (167 aa)
	sf3a2	Splicing factor 3a, subunit 2. (294 aa)
	prpf19	Pre-mRNA processing factor 19. (1489 aa)
	xab2	XPA binding protein 2. (854 aa)
	ENSONIP00000045172	Receptor-type tyrosine-protein phosphatase-like. (163 aa)
	rbmx2	RRM domain-containing protein. (71 aa)
	spaca6	Sperm acrosome membrane-associated protein 6 isoform X1. (331 aa)
	dhx38	DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1261 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1473 aa)
	ENSONIP00000052157	annotation not available (201 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	ppie	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (309 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (1011 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (246 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (256 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (237 aa)
	Ddx42	DEAD (Asp-Glu-Ala-Asp) box helicase 42. (926 aa)
	Snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	plrg1	Pleiotropic regulator 1. (513 aa)
	LOC100706680	Peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X1. (1167 aa)
	Snrpf	Small nuclear ribonucleoprotein F. (85 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (110 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
	rnpc3	RNA-binding region (RNP1, RRM) containing 3. (602 aa)
	snrpe	Small nuclear ribonucleoprotein E. (92 aa)
	I3JSM1_ORENI	Serine/arginine repetitive matrix 2. (1331 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (758 aa)
	dhx35	DEAH-box helicase 35. (706 aa)
	dhx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33. (681 aa)
	ENSONIP00000076847	Cell division cycle 5-like protein. (335 aa)
	syf2	SYF2 pre-mRNA-splicing factor. (239 aa)
	zcrb1	Zinc finger CCHC-type and RNA binding motif 1. (252 aa)
	bud31	BUD31 homolog. (144 aa)
	ENSONIP00000078322	Uncharacterized protein LOC102080180. (143 aa)
	cdc5l	CDC5 cell division cycle 5-like (S. pombe). (882 aa)
	rnf113a	Ring finger protein 113A. (322 aa)
	ppil2	Peptidylprolyl isomerase (cyclophilin)-like 2. (538 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ddx42	ENSONIP00000045172	ENSONIP00000064308	ENSONIP00000045172	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Receptor-type tyrosine-protein phosphatase-like.	0.592
Ddx42	ENSONIP00000052157	ENSONIP00000064308	ENSONIP00000052157	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	annotation not available	0.906
Ddx42	ENSONIP00000078322	ENSONIP00000064308	ENSONIP00000078322	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Uncharacterized protein LOC102080180.	0.592
Ddx42	I3JSM1_ORENI	ENSONIP00000064308	ENSONIP00000072810	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Serine/arginine repetitive matrix 2.	0.493
Ddx42	I3KV64_ORENI	ENSONIP00000064308	ENSONIP00000025010	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Uncharacterized protein.	0.441
Ddx42	LOC100702978	ENSONIP00000064308	ENSONIP00000001437	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Src homology 2 domain containing transforming protein D, a.	0.422
Ddx42	LOC100703771	ENSONIP00000064308	ENSONIP00000000646	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	DEAH (Asp-Glu-Ala-His) box polypeptide 32b.	0.632
Ddx42	LOC100706293	ENSONIP00000064308	ENSONIP00000039827	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Leucine rich repeat containing 51.	0.441
Ddx42	LOC100712087	ENSONIP00000064308	ENSONIP00000020716	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Uncharacterized protein.	0.441
Ddx42	LSM10	ENSONIP00000064308	ENSONIP00000026207	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	LSM10, U7 small nuclear RNA associated.	0.711
Ddx42	SRRM3	ENSONIP00000064308	ENSONIP00000016023	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Serine/arginine repetitive matrix protein 3 isoform X1.	0.448
Ddx42	Snrpa1	ENSONIP00000064308	ENSONIP00000014349	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Small nuclear ribonucleoprotein polypeptide A.	0.609
Ddx42	Snrpf	ENSONIP00000064308	ENSONIP00000068044	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Small nuclear ribonucleoprotein F.	0.789
Ddx42	Snrpg	ENSONIP00000064308	ENSONIP00000064463	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Small nuclear ribonucleoprotein G.	0.737
Ddx42	WDR25	ENSONIP00000064308	ENSONIP00000004471	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	WD repeat domain 25.	0.428
Ddx42	WDR70	ENSONIP00000064308	ENSONIP00000017600	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	WD repeat domain 70.	0.445
Ddx42	Zmat5	ENSONIP00000064308	ENSONIP00000017550	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Zinc finger, matrin-type 5.	0.854
Ddx42	cdc40	ENSONIP00000064308	ENSONIP00000016887	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Cell division cycle 40 homolog (S. cerevisiae).	0.488
Ddx42	crnkl1	ENSONIP00000064308	ENSONIP00000072834	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Crooked neck pre-mRNA splicing factor 1.	0.425
Ddx42	cwc25	ENSONIP00000064308	ENSONIP00000004083	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	CWC25 spliceosome associated protein homolog.	0.478