23 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sf3b4	Splicing factor 3b, subunit 4. (421 aa)
	snrpa	Small nuclear ribonucleoprotein polypeptide A. (282 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	sf3a3	Splicing factor 3a, subunit 3. (501 aa)
	sf3a1	Splicing factor 3a, subunit 1. (785 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	Snrpa1	Small nuclear ribonucleoprotein polypeptide A. (291 aa)
	sf3b2	Splicing factor 3b, subunit 2. (871 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1311 aa)
	Zmat5	Zinc finger, matrin-type 5. (175 aa)
	ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1181 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	snrnp35	Small nuclear ribonucleoprotein 35 (U11/U12). (237 aa)
	sf3a2	Splicing factor 3a, subunit 2. (294 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (256 aa)
	Ddx42	DEAD (Asp-Glu-Ala-Asp) box helicase 42. (926 aa)
	Snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	Snrpf	Small nuclear ribonucleoprotein F. (85 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (110 aa)
	snrpe	Small nuclear ribonucleoprotein E. (92 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ddx42	Snrpa1	ENSONIP00000064308	ENSONIP00000014349	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Small nuclear ribonucleoprotein polypeptide A.	0.609
Ddx42	Snrpf	ENSONIP00000064308	ENSONIP00000068044	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Small nuclear ribonucleoprotein F.	0.789
Ddx42	Snrpg	ENSONIP00000064308	ENSONIP00000064463	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Small nuclear ribonucleoprotein G.	0.737
Ddx42	Zmat5	ENSONIP00000064308	ENSONIP00000017550	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Zinc finger, matrin-type 5.	0.854
Ddx42	ddx46	ENSONIP00000064308	ENSONIP00000021797	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	0.684
Ddx42	phf5a	ENSONIP00000064308	ENSONIP00000055141	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	PHD finger protein 5A.	0.993
Ddx42	sf3a1	ENSONIP00000064308	ENSONIP00000013643	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Splicing factor 3a, subunit 1.	0.802
Ddx42	sf3a2	ENSONIP00000064308	ENSONIP00000041194	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Splicing factor 3a, subunit 2.	0.966
Ddx42	sf3a3	ENSONIP00000064308	ENSONIP00000012948	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Splicing factor 3a, subunit 3.	0.738
Ddx42	sf3b1	ENSONIP00000064308	ENSONIP00000017307	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Splicing factor 3b, subunit 1.	0.999
Ddx42	sf3b2	ENSONIP00000064308	ENSONIP00000016434	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Splicing factor 3b, subunit 2.	0.995
Ddx42	sf3b3	ENSONIP00000064308	ENSONIP00000014093	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Splicing factor 3b, subunit 3.	0.998
Ddx42	sf3b4	ENSONIP00000064308	ENSONIP00000003422	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Splicing factor 3b, subunit 4.	0.996
Ddx42	sf3b5	ENSONIP00000064308	ENSONIP00000026030	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.994
Ddx42	sf3b6	ENSONIP00000064308	ENSONIP00000081377	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Splicing factor 3b, subunit 6.	0.993
Ddx42	snrpa	ENSONIP00000064308	ENSONIP00000004732	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Small nuclear ribonucleoprotein polypeptide A.	0.586
Ddx42	snrpb	ENSONIP00000064308	ENSONIP00000056472	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Small nuclear ribonucleoprotein-associated protein.	0.592
Ddx42	snrpd1	ENSONIP00000064308	ENSONIP00000068638	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.740
Ddx42	snrpd2	ENSONIP00000064308	ENSONIP00000054582	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Small nuclear ribonucleoprotein Sm D2.	0.742
Ddx42	snrpd3	ENSONIP00000064308	ENSONIP00000004821	DEAD (Asp-Glu-Ala-Asp) box helicase 42.	Small nuclear ribonucleoprotein Sm D3.	0.756