(14 nodes) Mixed, incl. DEAD-box helicase, OB fold, and SDE2-like, C-terminal domain network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fam32a	Family with sequence similarity 32 member A. (113 aa)
	nkap	NFKB activating protein. (408 aa)
	ENSONIP00000006996	Nuclear speckle splicing regulatory protein 1. (344 aa)
	leng1	Leukocyte receptor cluster (LRC) member 1. (276 aa)
	Cwc22	MI domain-containing protein. (1025 aa)
	sde2	SDE2 telomere maintenance homolog (S. pombe). (416 aa)
	fam50a	Family with sequence similarity 50 member A. (370 aa)
	cactin	Cactin. (875 aa)
	ppil4	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (470 aa)
	prkrip1	PRKR interacting protein 1. (135 aa)
	lg7hxorf56	Zgc:103697. (267 aa)
	lg12h9orf78	Zgc:103692. (291 aa)
	dhx34	DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1172 aa)
	Dhx40	DEAH (Asp-Glu-Ala-His) box polypeptide 40. (763 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cwc22	Dhx40	ENSONIP00000008688	ENSONIP00000054635	MI domain-containing protein.	DEAH (Asp-Glu-Ala-His) box polypeptide 40.	0.827
Cwc22	ENSONIP00000006996	ENSONIP00000008688	ENSONIP00000006996	MI domain-containing protein.	Nuclear speckle splicing regulatory protein 1.	0.685
Cwc22	cactin	ENSONIP00000008688	ENSONIP00000012869	MI domain-containing protein.	Cactin.	0.836
Cwc22	dhx34	ENSONIP00000008688	ENSONIP00000038932	MI domain-containing protein.	DEAH (Asp-Glu-Ala-His) box polypeptide 34.	0.916
Cwc22	fam32a	ENSONIP00000008688	ENSONIP00000002888	MI domain-containing protein.	Family with sequence similarity 32 member A.	0.991
Cwc22	fam50a	ENSONIP00000008688	ENSONIP00000011442	MI domain-containing protein.	Family with sequence similarity 50 member A.	0.665
Cwc22	leng1	ENSONIP00000008688	ENSONIP00000008306	MI domain-containing protein.	Leukocyte receptor cluster (LRC) member 1.	0.694
Cwc22	lg12h9orf78	ENSONIP00000008688	ENSONIP00000034121	MI domain-containing protein.	Zgc:103692.	0.734
Cwc22	lg7hxorf56	ENSONIP00000008688	ENSONIP00000026587	MI domain-containing protein.	Zgc:103697.	0.645
Cwc22	nkap	ENSONIP00000008688	ENSONIP00000003187	MI domain-containing protein.	NFKB activating protein.	0.870
Cwc22	ppil4	ENSONIP00000008688	ENSONIP00000014348	MI domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	0.843
Cwc22	prkrip1	ENSONIP00000008688	ENSONIP00000026223	MI domain-containing protein.	PRKR interacting protein 1.	0.851
Cwc22	sde2	ENSONIP00000008688	ENSONIP00000009130	MI domain-containing protein.	SDE2 telomere maintenance homolog (S. pombe).	0.887
Dhx40	Cwc22	ENSONIP00000054635	ENSONIP00000008688	DEAH (Asp-Glu-Ala-His) box polypeptide 40.	MI domain-containing protein.	0.827
Dhx40	ENSONIP00000006996	ENSONIP00000054635	ENSONIP00000006996	DEAH (Asp-Glu-Ala-His) box polypeptide 40.	Nuclear speckle splicing regulatory protein 1.	0.716
Dhx40	fam32a	ENSONIP00000054635	ENSONIP00000002888	DEAH (Asp-Glu-Ala-His) box polypeptide 40.	Family with sequence similarity 32 member A.	0.601
Dhx40	fam50a	ENSONIP00000054635	ENSONIP00000011442	DEAH (Asp-Glu-Ala-His) box polypeptide 40.	Family with sequence similarity 50 member A.	0.503
Dhx40	lg12h9orf78	ENSONIP00000054635	ENSONIP00000034121	DEAH (Asp-Glu-Ala-His) box polypeptide 40.	Zgc:103692.	0.544
Dhx40	lg7hxorf56	ENSONIP00000054635	ENSONIP00000026587	DEAH (Asp-Glu-Ala-His) box polypeptide 40.	Zgc:103697.	0.450
Dhx40	nkap	ENSONIP00000054635	ENSONIP00000003187	DEAH (Asp-Glu-Ala-His) box polypeptide 40.	NFKB activating protein.	0.643