(23 nodes) RNA export from nucleus network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100709252	RRM domain-containing protein. (258 aa)
	srrt	Serrate RNA effector molecule homolog (Arabidopsis). (877 aa)
	I3JNS6_ORENI	Polymerase (DNA-directed), delta interacting protein 3. (422 aa)
	thoc6	THO complex 6. (394 aa)
	chtop	Chromatin target of PRMT1a. (235 aa)
	LOC100710359	Uncharacterized protein. (869 aa)
	sarnp	SAP domain containing ribonucleoprotein. (210 aa)
	alyref	Aly/REF export factor. (278 aa)
	phax	Phosphorylated adaptor for RNA export. (409 aa)
	LOC100711348	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B. (455 aa)
	ENSONIP00000031680	Nuclear cap-binding protein subunit 2-like. (120 aa)
	thoc1	THO complex 1. (650 aa)
	Zc3h11a	Zinc finger CCCH-type containing 11A. (242 aa)
	ENSONIP00000046810	Nuclear cap-binding protein subunit 2-like. (91 aa)
	Thoc2	THO complex 2. (1503 aa)
	LOC100704968	Uncharacterized protein. (440 aa)
	thoc5	THO complex 5. (690 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (816 aa)
	thoc7	THO complex 7. (215 aa)
	DDX39A	DExD-box helicase 39A. (443 aa)
	LOC100702413	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
	thoc3	THO complex 3. (327 aa)
	ENSONIP00000075314	annotation not available (120 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX39A	ENSONIP00000031680	ENSONIP00000068117	ENSONIP00000031680	DExD-box helicase 39A.	Nuclear cap-binding protein subunit 2-like.	0.621
DDX39A	ENSONIP00000046810	ENSONIP00000068117	ENSONIP00000046810	DExD-box helicase 39A.	Nuclear cap-binding protein subunit 2-like.	0.621
DDX39A	ENSONIP00000075314	ENSONIP00000068117	ENSONIP00000075314	DExD-box helicase 39A.	annotation not available	0.621
DDX39A	I3JNS6_ORENI	ENSONIP00000068117	ENSONIP00000010520	DExD-box helicase 39A.	Polymerase (DNA-directed), delta interacting protein 3.	0.859
DDX39A	LOC100702413	ENSONIP00000068117	ENSONIP00000071076	DExD-box helicase 39A.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.621
DDX39A	LOC100709252	ENSONIP00000068117	ENSONIP00000004137	DExD-box helicase 39A.	RRM domain-containing protein.	0.921
DDX39A	LOC100710359	ENSONIP00000068117	ENSONIP00000020257	DExD-box helicase 39A.	Uncharacterized protein.	0.676
DDX39A	NCBP1	ENSONIP00000068117	ENSONIP00000058989	DExD-box helicase 39A.	Nuclear cap binding protein subunit 1.	0.789
DDX39A	Thoc2	ENSONIP00000068117	ENSONIP00000052051	DExD-box helicase 39A.	THO complex 2.	0.959
DDX39A	Zc3h11a	ENSONIP00000068117	ENSONIP00000036820	DExD-box helicase 39A.	Zinc finger CCCH-type containing 11A.	0.603
DDX39A	alyref	ENSONIP00000068117	ENSONIP00000024463	DExD-box helicase 39A.	Aly/REF export factor.	0.945
DDX39A	chtop	ENSONIP00000068117	ENSONIP00000013028	DExD-box helicase 39A.	Chromatin target of PRMT1a.	0.822
DDX39A	sarnp	ENSONIP00000068117	ENSONIP00000020808	DExD-box helicase 39A.	SAP domain containing ribonucleoprotein.	0.951
DDX39A	srrt	ENSONIP00000068117	ENSONIP00000005340	DExD-box helicase 39A.	Serrate RNA effector molecule homolog (Arabidopsis).	0.676
DDX39A	thoc1	ENSONIP00000068117	ENSONIP00000035853	DExD-box helicase 39A.	THO complex 1.	0.920
DDX39A	thoc3	ENSONIP00000068117	ENSONIP00000071767	DExD-box helicase 39A.	THO complex 3.	0.867
DDX39A	thoc5	ENSONIP00000068117	ENSONIP00000055935	DExD-box helicase 39A.	THO complex 5.	0.917
DDX39A	thoc6	ENSONIP00000068117	ENSONIP00000011722	DExD-box helicase 39A.	THO complex 6.	0.866
DDX39A	thoc7	ENSONIP00000068117	ENSONIP00000060294	DExD-box helicase 39A.	THO complex 7.	0.908
ENSONIP00000031680	DDX39A	ENSONIP00000031680	ENSONIP00000068117	Nuclear cap-binding protein subunit 2-like.	DExD-box helicase 39A.	0.621