STRINGSTRING
shprh shprh hltf hltf LOC100695822 LOC100695822 xpc xpc ube2j1 ube2j1 LOC100697510 LOC100697510 LOC100698375 LOC100698375 ENSONIP00000003378 ENSONIP00000003378 I3J513_ORENI I3J513_ORENI ube2z ube2z LOC100709870 LOC100709870 LOC100702014 LOC100702014 rnf20 rnf20 trip12 trip12 rnf111 rnf111 rnf8 rnf8 traf7 traf7 rad23a rad23a LOC100695703 LOC100695703 Birc6 Birc6 LOC100705137 LOC100705137 ube2k ube2k ercc6 ercc6 ube2h ube2h Ube2w Ube2w RAD23B RAD23B ENSONIP00000020099 ENSONIP00000020099 xpa xpa c1qtnf12 c1qtnf12 pdzrn4 pdzrn4 LOC100691685 LOC100691685 Bivm Bivm rnf40 rnf40 OTUB2 OTUB2 UBR1 UBR1 ube2r2 ube2r2 ENSONIP00000026188 ENSONIP00000026188 LOC100708998 LOC100708998 LOC100697459 LOC100697459 mib2 mib2 LOC100712348 LOC100712348 ube2v2 ube2v2 LOC100708886 LOC100708886 otub1 otub1 LOC100705406 LOC100705406 ENSONIP00000034347 ENSONIP00000034347 UBE2D3 UBE2D3 ube2g1 ube2g1 I3JUK8_ORENI I3JUK8_ORENI LOC102081483 LOC102081483 LOC100694737 LOC100694737 ENSONIP00000038349 ENSONIP00000038349 ENSONIP00000038802 ENSONIP00000038802 LOC100694779 LOC100694779 trim23 trim23 Tep1 Tep1 LOC106098710 LOC106098710 uba1 uba1 ube2b ube2b LOC100695807 LOC100695807 UBA6 UBA6 LOC100695995 LOC100695995 pdzrn3 pdzrn3 LOC100711003 LOC100711003 LOC100710794 LOC100710794 LOC100699741 LOC100699741 LOC100711601 LOC100711601 Ubr2 Ubr2 LOC100695653 LOC100695653 ube2ql1 ube2ql1 UBE2D1 UBE2D1 oxtr oxtr LOC109194230 LOC109194230 ENSONIP00000075286 ENSONIP00000075286 ube2a ube2a I3K699_ORENI I3K699_ORENI Rnf4 Rnf4 LOC100695155 LOC100695155
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
shprhSNF2 histone linker PHD RING helicase. (1661 aa)
hltfHelicase-like transcription factor. (968 aa)
LOC100695822Centrin 4. (171 aa)
xpcXeroderma pigmentosum, complementation group C. (930 aa)
ube2j1Ubiquitin-conjugating enzyme E2, J1. (317 aa)
LOC100697510HMG box domain-containing protein. (471 aa)
LOC100698375UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (238 aa)
ENSONIP00000003378Ubiquitin-conjugating enzyme E2Q family member 1. (412 aa)
I3J513_ORENIUBIQUITIN_CONJUGAT_2 domain-containing protein. (200 aa)
ube2zUbiquitin-conjugating enzyme E2Z. (403 aa)
LOC100709870Ubiquitin-conjugating enzyme E2G 1b (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (170 aa)
LOC100702014Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family. (1014 aa)
rnf20E3 ubiquitin protein ligase. (1031 aa)
trip12Thyroid hormone receptor interactor 12. (2065 aa)
rnf111Ring finger protein 111. (1006 aa)
rnf8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (489 aa)
traf7TNF receptor-associated factor 7. (692 aa)
rad23aRAD23 homolog A, nucleotide excision repair protein a. (365 aa)
LOC100695703Si:ch211-212o1.2. (283 aa)
Birc6Baculoviral IAP repeat containing 6. (4824 aa)
LOC100705137Ubiquitin-conjugating enzyme E2E 2; Belongs to the ubiquitin-conjugating enzyme family. (201 aa)
ube2kUbiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
ercc6Excision repair cross-complementation group 6. (1437 aa)
ube2hUbiquitin-conjugating enzyme E2H (UBC8 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (183 aa)
Ube2wUBIQUITIN_CONJUGAT_2 domain-containing protein. (215 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (369 aa)
ENSONIP00000020099Ubiquitin-conjugating enzyme E2 G1 isoform X2. (94 aa)
xpaXeroderma pigmentosum, complementation group A. (271 aa)
c1qtnf12C1q and TNF related 12. (321 aa)
pdzrn4PDZ domain containing ring finger 4. (815 aa)
LOC100691685E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recrui [...] (442 aa)
BivmBasic, immunoglobulin-like variable motif containing. (518 aa)
rnf40E3 ubiquitin protein ligase. (1005 aa)
OTUB2OTU deubiquitinase, ubiquitin aldehyde binding 2. (227 aa)
UBR1E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (1740 aa)
ube2r2Ubiquitin-conjugating enzyme E2R 2; Belongs to the ubiquitin-conjugating enzyme family. (260 aa)
ENSONIP00000026188Polyubiquitin-like. (118 aa)
LOC100708998UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
LOC100697459Ubiquitin-conjugating enzyme E2 E2. (206 aa)
mib2Mindbomb E3 ubiquitin protein ligase 2. (1028 aa)
LOC100712348Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family. (254 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (148 aa)
LOC100708886Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
otub1Ubiquitin thioesterase. (279 aa)
LOC100705406UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (194 aa)
ENSONIP00000034347annotation not available (107 aa)
UBE2D3Ubiquitin conjugating enzyme E2 D3. (151 aa)
ube2g1Ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (179 aa)
I3JUK8_ORENIUncharacterized protein. (188 aa)
LOC102081483Ubiquitin-conjugating enzyme E2 variant 1. (153 aa)
LOC100694737Transmembrane protein 189. (275 aa)
ENSONIP00000038349RING finger protein 223. (144 aa)
ENSONIP00000038802Uncharacterized protein LOC100692229 isoform X1. (166 aa)
LOC100694779UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
trim23Tripartite motif containing 23. (566 aa)
Tep1Telomerase protein component 1 isoform X1. (672 aa)
LOC106098710Uncharacterized protein. (565 aa)
uba1Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family. (1088 aa)
ube2bUbiquitin-conjugating enzyme E2B (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
LOC100695807UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (183 aa)
UBA6Ubiquitin like modifier activating enzyme 6. (1049 aa)
LOC100695995Ubiquitin-conjugating enzyme E2Q family member 2. (377 aa)
pdzrn3PDZ domain containing RING finger 3b. (1047 aa)
LOC100711003Cell division cycle 34 homolog (S. cerevisiae) a; Belongs to the ubiquitin-conjugating enzyme family. (242 aa)
LOC100710794Ubiquitin-conjugating enzyme E2 A. (167 aa)
LOC100699741UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (138 aa)
LOC100711601Uncharacterized protein. (128 aa)
Ubr2E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (1693 aa)
LOC100695653Ubiquitin-conjugating enzyme E2D 4 (putative); Belongs to the ubiquitin-conjugating enzyme family. (164 aa)
ube2ql1Ubiquitin-conjugating enzyme E2Q family-like 1. (291 aa)
UBE2D1Ubiquitin-conjugating enzyme E2D 1a; Belongs to the ubiquitin-conjugating enzyme family. (186 aa)
oxtrRAD18 E3 ubiquitin protein ligase. (497 aa)
LOC109194230Ubiquitin-conjugating enzyme E2 D4. (202 aa)
ENSONIP00000075286annotation not available (92 aa)
ube2aUbiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
I3K699_ORENIPlac8 onzin related protein 2. (128 aa)
Rnf4E3 ubiquitin-protein ligase RNF4 isoform X1. (192 aa)
LOC100695155Ubiquitin-conjugating enzyme E2 D2 isoform X1. (181 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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