STRINGSTRING
LOC100708570 LOC100708570 ankle2 ankle2 I3K885_ORENI I3K885_ORENI Vrk2 Vrk2 LOC102076003 LOC102076003 rif1 rif1 LOC102076719 LOC102076719 ENSONIP00000036487 ENSONIP00000036487 ENSONIP00000041714 ENSONIP00000041714 I3JYI3_ORENI I3JYI3_ORENI lemd3 lemd3 LOC100691959 LOC100691959 LOC100693984 LOC100693984 LOC100711486 LOC100711486 lmnb2 lmnb2 lmna lmna I3KLR4_ORENI I3KLR4_ORENI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100708570Barrier-to-autointegration factor-like protein. (90 aa)
ankle2Ankyrin repeat and LEM domain containing 2. (971 aa)
I3K885_ORENIUncharacterized protein; Belongs to the intermediate filament family. (659 aa)
Vrk2VRK serine/threonine kinase 2; Belongs to the protein kinase superfamily. (593 aa)
LOC102076003SUN domain-containing protein 1/2. (629 aa)
rif1Replication timing regulatory factor 1. (2388 aa)
LOC102076719Uncharacterized protein. (96 aa)
ENSONIP00000036487annotation not available (1080 aa)
ENSONIP00000041714annotation not available (270 aa)
I3JYI3_ORENIVRK serine/threonine kinase 1; Belongs to the protein kinase superfamily. (483 aa)
lemd3LEM domain containing 3. (844 aa)
LOC100691959Lamin L3; Belongs to the intermediate filament family. (644 aa)
LOC100693984Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (311 aa)
LOC100711486Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma. (358 aa)
lmnb2Lamin B2; Belongs to the intermediate filament family. (616 aa)
lmnaLamin A; Belongs to the intermediate filament family. (658 aa)
I3KLR4_ORENICaspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (317 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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