STRINGSTRING
Vsx1 Vsx1 Atoh7 Atoh7 foxn4 foxn4 ptf1a ptf1a barhl2 barhl2 I3JUP0_ORENI I3JUP0_ORENI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Vsx1Visual system homeobox 1 homolog, chx10-like. (344 aa)
Atoh7Atonal bHLH transcription factor 7. (148 aa)
foxn4Forkhead box N4. (515 aa)
ptf1aPancreas associated transcription factor 1a. (273 aa)
barhl2BarH-like homeobox 2. (365 aa)
I3JUP0_ORENIPOU domain protein. (351 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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