STRINGSTRING
cstf2 cstf2 LOC100704180 LOC100704180 cstf1 cstf1 CPSF3 CPSF3 clp1 clp1 cstf3 cstf3 cpsf2 cpsf2 LOC100706148 LOC100706148 sympk sympk ssu72 ssu72 ENSONIP00000029091 ENSONIP00000029091 zc3h3 zc3h3 WDR33 WDR33 Pcf11 Pcf11 LOC100692710 LOC100692710 cpsf1 cpsf1 I3IXK7_ORENI I3IXK7_ORENI cpsf4 cpsf4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (513 aa)
LOC100704180Poly(A) polymerase gamma. (852 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (691 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (718 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
LOC100706148FIP1 like 1b (S. cerevisiae). (556 aa)
sympkSymplekin. (1223 aa)
ssu72SSU72 homolog, RNA polymerase II CTD phosphatase. (198 aa)
ENSONIP00000029091annotation not available (345 aa)
zc3h3Zinc finger CCCH domain-containing protein 3 isoform X4. (895 aa)
WDR33WD repeat domain 33. (1125 aa)
Pcf11PCF11 cleavage and polyadenylation factor subunit. (100 aa)
LOC100692710Cleavage and polyadenylation specific factor 3. (758 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1470 aa)
I3IXK7_ORENIPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (562 aa)
cpsf4Cleavage and polyadenylation specific factor 4. (277 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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