95 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl7l1	Ribosomal protein L7-like 1. (273 aa)
	fau	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (194 aa)
	rsad1	Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (442 aa)
	I3J1P0_ORENI	Coiled-coil domain containing 105. (406 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (279 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (220 aa)
	rps25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (128 aa)
	rpl13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
	rpl18	60S ribosomal protein L18; Component of the large ribosomal subunit. (188 aa)
	rpl28	Ribosomal protein L28. (142 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	RPL38	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (72 aa)
	rpl9	Ribosomal protein L9. (192 aa)
	rpl27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
	ifi35	Interferon-induced protein 35. (374 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	rpl10a	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	fance	FA complementation group E. (560 aa)
	cd74	CD74 molecule, major histocompatibility complex, class II invariant chain a. (351 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	rpl6	Ribosomal protein L6. (325 aa)
	rps10	Ribosomal protein S10. (168 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	LOC100689943	Ribosomal protein S19. (163 aa)
	RPL19-2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	LOC100708525	Ribosomal protein L26. (145 aa)
	rps14	Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (193 aa)
	rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (149 aa)
	rplp0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (315 aa)
	RPS19	Ribosomal protein S19. (175 aa)
	ENSONIP00000028977	annotation not available (69 aa)
	I3J2M6_ORENI	Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family. (151 aa)
	ENSONIP00000029827	annotation not available (173 aa)
	RPL5	Ribosomal protein L5. (299 aa)
	rpl36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	RPL5-2	Large subunit ribosomal protein L5e. (316 aa)
	LOC100707344	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (312 aa)
	ENSONIP00000032299	annotation not available (85 aa)
	Rpl37a	Large subunit ribosomal protein L37Ae. (68 aa)
	rpl10	Ribosomal protein L10. (285 aa)
	rpl24	Ribosomal protein L24. (432 aa)
	RPL3L	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family. (429 aa)
	I3KJ27_ORENI	Dedicator of cytokinesis 4b; Belongs to the DOCK family. (1915 aa)
	rack1	Guanine nucleotide-binding protein subunit beta-2-like 1; Involved in the recruitment, assembly and/or regulation of a variety of signaling molecules. Interacts with a wide variety of proteins and plays a role in many cellular processes. Required for VANGL2 membrane localization, inhibits Wnt signaling and regulates cellular polarization and oriented cell division during gastrulation (By similarity); Belongs to the WD repeat G protein beta family. Ribosomal protein RACK1 subfamily. (323 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	rps12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (140 aa)
	rps21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (94 aa)
	Rpl34	Large subunit ribosomal protein L34e. (156 aa)
	LOC100691333	40S ribosomal protein S27. (93 aa)
	rps16	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (164 aa)
	ENSONIP00000041950	Ribosomal protein S28. (63 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (212 aa)
	rpl14	Ribosomal protein L14. (137 aa)
	rpl7	Ribosomal protein L7. (245 aa)
	rps5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (224 aa)
	rpl4	Ribosomal protein L4. (383 aa)
	eif1ax	Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (151 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (261 aa)
	rps9	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
	LOC100699599	Uncharacterized protein. (144 aa)
	Rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (225 aa)
	LOC100699889	Ribosomal protein L22-like 1. (129 aa)
	rps15	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (170 aa)
	rpl11	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)
	arl6ip1	ADP-ribosylation factor-like 6 interacting protein 1. (203 aa)
	rpl31	Ribosomal protein L31. (213 aa)
	Rps7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (207 aa)
	Rpl35a	Large subunit ribosomal protein L35Ae. (110 aa)
	RPL7A	Ribosomal protein L7a. (281 aa)
	Rpl39	Large subunit ribosomal protein L39e. (52 aa)
	ENSONIP00000059020	annotation not available (118 aa)
	ENSONIP00000060841	annotation not available (125 aa)
	LOC100691806	Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	rps20	Ribosomal protein S20. (157 aa)
	rps18	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (1034 aa)
	rpl13a	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
	rpl35	Ribosomal protein L35. (138 aa)
	rpl32	Ribosomal protein L32. (150 aa)
	rps15a	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (160 aa)
	rps8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (253 aa)
	rps13	Small subunit ribosomal protein S13e. (151 aa)
	rps3	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (298 aa)
	RPL27A	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (181 aa)
	I3KBJ9_ORENI	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (139 aa)
	rps24	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
	ENSONIP00000074793	Small subunit ribosomal protein S17e. (182 aa)
	LOC100711099	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (470 aa)
	rps4x	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (298 aa)
	ENSONIP00000079022	60S ribosomal protein L27a-like isoform X3. (30 aa)
	rps6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	RPS29	Ribosomal protein S29. (60 aa)
	rps23	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (161 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000028977	ENSONIP00000029827	ENSONIP00000028977	ENSONIP00000029827	annotation not available	annotation not available	0.964
ENSONIP00000028977	ENSONIP00000032299	ENSONIP00000028977	ENSONIP00000032299	annotation not available	annotation not available	0.981
ENSONIP00000028977	ENSONIP00000041950	ENSONIP00000028977	ENSONIP00000041950	annotation not available	Ribosomal protein S28.	0.981
ENSONIP00000028977	ENSONIP00000059020	ENSONIP00000028977	ENSONIP00000059020	annotation not available	annotation not available	0.962
ENSONIP00000028977	ENSONIP00000060841	ENSONIP00000028977	ENSONIP00000060841	annotation not available	annotation not available	0.983
ENSONIP00000028977	ENSONIP00000074793	ENSONIP00000028977	ENSONIP00000074793	annotation not available	Small subunit ribosomal protein S17e.	0.994
ENSONIP00000028977	ENSONIP00000079022	ENSONIP00000028977	ENSONIP00000079022	annotation not available	60S ribosomal protein L27a-like isoform X3.	0.967
ENSONIP00000028977	I3J1P0_ORENI	ENSONIP00000028977	ENSONIP00000002780	annotation not available	Coiled-coil domain containing 105.	0.964
ENSONIP00000028977	I3J2M6_ORENI	ENSONIP00000028977	ENSONIP00000029087	annotation not available	Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family.	0.982
ENSONIP00000028977	I3KBJ9_ORENI	ENSONIP00000028977	ENSONIP00000072715	annotation not available	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.949
ENSONIP00000028977	I3KJ27_ORENI	ENSONIP00000028977	ENSONIP00000036623	annotation not available	Dedicator of cytokinesis 4b; Belongs to the DOCK family.	0.970
ENSONIP00000028977	LOC100689943	ENSONIP00000028977	ENSONIP00000020360	annotation not available	Ribosomal protein S19.	0.984
ENSONIP00000028977	LOC100691333	ENSONIP00000028977	ENSONIP00000040768	annotation not available	40S ribosomal protein S27.	0.961
ENSONIP00000028977	LOC100691806	ENSONIP00000028977	ENSONIP00000060929	annotation not available	Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.949
ENSONIP00000028977	LOC100699599	ENSONIP00000028977	ENSONIP00000050767	annotation not available	Uncharacterized protein.	0.946
ENSONIP00000028977	LOC100699889	ENSONIP00000028977	ENSONIP00000052739	annotation not available	Ribosomal protein L22-like 1.	0.946
ENSONIP00000028977	LOC100707344	ENSONIP00000028977	ENSONIP00000031418	annotation not available	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family.	0.995
ENSONIP00000028977	LOC100708525	ENSONIP00000028977	ENSONIP00000022288	annotation not available	Ribosomal protein L26.	0.986
ENSONIP00000028977	LOC100711099	ENSONIP00000028977	ENSONIP00000076368	annotation not available	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.967
ENSONIP00000028977	RPL19	ENSONIP00000028977	ENSONIP00000001138	annotation not available	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.964