30 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (220 aa)
	rpl13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
	rpl18	60S ribosomal protein L18; Component of the large ribosomal subunit. (188 aa)
	rpl28	Ribosomal protein L28. (142 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	RPL38	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (72 aa)
	rpl9	Ribosomal protein L9. (192 aa)
	rpl27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	rpl6	Ribosomal protein L6. (325 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	LOC100708525	Ribosomal protein L26. (145 aa)
	rplp0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (315 aa)
	rpl36	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	Rpl37a	Large subunit ribosomal protein L37Ae. (68 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	rps12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (140 aa)
	Rpl34	Large subunit ribosomal protein L34e. (156 aa)
	rpl4	Ribosomal protein L4. (383 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (261 aa)
	rpl11	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)
	rpl31	Ribosomal protein L31. (213 aa)
	Rpl35a	Large subunit ribosomal protein L35Ae. (110 aa)
	RPL7A	Ribosomal protein L7a. (281 aa)
	Rpl39	Large subunit ribosomal protein L39e. (52 aa)
	rpl13a	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
	rpl35	Ribosomal protein L35. (138 aa)
	rpl32	Ribosomal protein L32. (150 aa)
	RPL27A	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (181 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100708525	RPL27A	ENSONIP00000022288	ENSONIP00000071813	Ribosomal protein L26.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.999
LOC100708525	RPL38	ENSONIP00000022288	ENSONIP00000010059	Ribosomal protein L26.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999
LOC100708525	RPL7A	ENSONIP00000022288	ENSONIP00000057546	Ribosomal protein L26.	Ribosomal protein L7a.	0.999
LOC100708525	Rpl34	ENSONIP00000022288	ENSONIP00000040634	Ribosomal protein L26.	Large subunit ribosomal protein L34e.	0.999
LOC100708525	Rpl35a	ENSONIP00000022288	ENSONIP00000054848	Ribosomal protein L26.	Large subunit ribosomal protein L35Ae.	0.999
LOC100708525	Rpl37a	ENSONIP00000022288	ENSONIP00000032425	Ribosomal protein L26.	Large subunit ribosomal protein L37Ae.	0.999
LOC100708525	Rpl39	ENSONIP00000022288	ENSONIP00000058926	Ribosomal protein L26.	Large subunit ribosomal protein L39e.	0.999
LOC100708525	rpl11	ENSONIP00000022288	ENSONIP00000053703	Ribosomal protein L26.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.999
LOC100708525	rpl13	ENSONIP00000022288	ENSONIP00000007470	Ribosomal protein L26.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
LOC100708525	rpl13a	ENSONIP00000022288	ENSONIP00000063014	Ribosomal protein L26.	Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.999
LOC100708525	rpl15	ENSONIP00000022288	ENSONIP00000012959	Ribosomal protein L26.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
LOC100708525	rpl17	ENSONIP00000022288	ENSONIP00000047928	Ribosomal protein L26.	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	0.999
LOC100708525	rpl18	ENSONIP00000022288	ENSONIP00000008247	Ribosomal protein L26.	60S ribosomal protein L18; Component of the large ribosomal subunit.	0.999
LOC100708525	rpl21	ENSONIP00000022288	ENSONIP00000017766	Ribosomal protein L26.	Ribosomal protein L21.	0.999
LOC100708525	rpl23a	ENSONIP00000022288	ENSONIP00000006133	Ribosomal protein L26.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
LOC100708525	rpl27	ENSONIP00000022288	ENSONIP00000012232	Ribosomal protein L26.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
LOC100708525	rpl28	ENSONIP00000022288	ENSONIP00000009440	Ribosomal protein L26.	Ribosomal protein L28.	0.999
LOC100708525	rpl29	ENSONIP00000022288	ENSONIP00000038136	Ribosomal protein L26.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
LOC100708525	rpl31	ENSONIP00000022288	ENSONIP00000054630	Ribosomal protein L26.	Ribosomal protein L31.	0.999
LOC100708525	rpl32	ENSONIP00000022288	ENSONIP00000063622	Ribosomal protein L26.	Ribosomal protein L32.	0.999