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dcaf13 dcaf13 pno1 pno1 tbl3 tbl3 bud23 bud23 rrp9 rrp9 utp4 utp4 esf1 esf1 LOC100706520 LOC100706520 Ddx10 Ddx10 rtca rtca fbl fbl kri1 kri1 rrp7a rrp7a utp18 utp18 rrp12 rrp12 utp20 utp20 I3JVK2_ORENI I3JVK2_ORENI imp4 imp4 glmn glmn Fcf1 Fcf1 wdr36 wdr36 ddx49 ddx49 emg1 emg1 tsr1 tsr1 nop58 nop58 riok2 riok2 utp15 utp15 nop14 nop14 wdr3 wdr3 rrp36 rrp36 I3KI60_ORENI I3KI60_ORENI wdr75 wdr75 utp6 utp6 bysl bysl heatr1 heatr1 LOC100709774 LOC100709774 utp25 utp25 nol10 nol10 nop56 nop56 LOC100701316 LOC100701316 I3KZE4_ORENI I3KZE4_ORENI utp3 utp3 dimt1 dimt1 gcc1 gcc1 wdr46 wdr46 rcl1 rcl1 pdcd11 pdcd11 krr1 krr1 nob1 nob1 nat10 nat10 nol6 nol6 LOC102080373 LOC102080373 LOC102076701 LOC102076701 ngdn ngdn noc4l noc4l imp3 imp3 ddx47 ddx47 bms1 bms1 utp23 utp23 Snu13 Snu13 abt1 abt1 dnttip2 dnttip2 utp11 utp11 ddx52 ddx52 Ltv1 Ltv1 wdr43 wdr43 nom1 nom1 mphosph10 mphosph10
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dcaf13Ddb1 and cul4 associated factor 13. (445 aa)
pno1Partner of NOB1 homolog. (252 aa)
tbl3Transducin (beta)-like 3. (930 aa)
bud23BUD23 rRNA methyltransferase and ribosome maturation factor. (282 aa)
rrp9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (481 aa)
utp4UTP4 small subunit processome component. (690 aa)
esf1ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae). (757 aa)
LOC100706520PWP2 small subunit processome component. (921 aa)
Ddx10RNA helicase. (919 aa)
rtcaRNA 3'-terminal phosphate cyclase. (366 aa)
fblFibrillarin. (320 aa)
kri1KRI1 homolog. (767 aa)
rrp7aRibosomal RNA processing 7 homolog A. (282 aa)
utp18WD_REPEATS_REGION domain-containing protein. (531 aa)
rrp12Ribosomal RNA processing 12 homolog. (1288 aa)
utp20UTP20 small subunit processome component. (2813 aa)
I3JVK2_ORENIZona pellucida glycoprotein d. (360 aa)
imp4IMP U3 small nucleolar ribonucleoprotein 4. (307 aa)
glmnGlomulin, FKBP associated protein a. (606 aa)
Fcf1FCF1 rRNA-processing protein. (198 aa)
wdr36WD repeat domain 36. (886 aa)
ddx49DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (477 aa)
emg1EMG1 N1-specific pseudouridine methyltransferase. (237 aa)
tsr1TSR1 ribosome maturation factor. (835 aa)
nop58NOP58 ribonucleoprotein homolog (yeast). (537 aa)
riok2RIO kinase 2 (yeast). (524 aa)
utp15UTP15 small subunit processome component. (531 aa)
nop14NOP14 nucleolar protein homolog (yeast). (871 aa)
wdr3WD repeat domain 3. (941 aa)
rrp36Ribosomal RNA processing 36. (286 aa)
I3KI60_ORENIPremelanosome protein b. (618 aa)
wdr75WD repeat domain 75. (834 aa)
utp6UTP6 small subunit processome component. (595 aa)
byslBystin-like. (435 aa)
heatr1HEAT repeat containing 1. (1911 aa)
LOC100709774Glomulin, FKBP associated protein b. (590 aa)
utp25UTP25 small subunit processor component. (648 aa)
nol10Nucleolar protein 10. (720 aa)
nop56NOP56 ribonucleoprotein homolog. (571 aa)
LOC100701316UTP14C small subunit processome component. (748 aa)
I3KZE4_ORENIApoptosis antagonizing transcription factor. (505 aa)
utp3UTP3 small subunit processome component. (461 aa)
dimt1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (309 aa)
gcc1GRIP and coiled-coil domain containing 1. (759 aa)
wdr46WD repeat domain 46. (599 aa)
rcl1RNA terminal phosphate cyclase-like 1. (376 aa)
pdcd11Programmed cell death 11. (1719 aa)
krr1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (393 aa)
nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (483 aa)
nat10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1055 aa)
nol6Nucleolar protein 6. (1182 aa)
LOC102080373Uncharacterized protein LOC102080373 isoform X1. (1020 aa)
LOC102076701Usher syndrome type-1C protein-binding protein 1. (682 aa)
ngdnNeuroguidin, EIF4E binding protein. (395 aa)
noc4lNucleolar complex associated 4 homolog. (559 aa)
imp3IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
ddx47DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (479 aa)
bms1BMS1 ribosome biogenesis factor. (1209 aa)
utp23UTP23 small subunit processome component. (270 aa)
Snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (221 aa)
abt1Activator of basal transcription 1. (323 aa)
dnttip2Uncharacterized protein. (902 aa)
utp11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (255 aa)
ddx52DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (679 aa)
Ltv1LTV1 ribosome biogenesis factor. (501 aa)
wdr43WD repeat domain 43. (654 aa)
nom1Nucleolar protein with MIF4G domain 1. (838 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (701 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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