STRINGSTRING
eif4a3 eif4a3 nbas nbas dcp1a dcp1a upf3b upf3b Helz2 Helz2 smg1 smg1 smg6 smg6 upf3a upf3a casc3 casc3 LOC100693655 LOC100693655 skiv2l skiv2l Smg8 Smg8 UPF2 UPF2 magoh magoh pnrc2 pnrc2 I3JWP1_ORENI I3JWP1_ORENI etf1 etf1 ENSONIP00000031680 ENSONIP00000031680 pym1 pym1 smg5 smg5 LOC100711565 LOC100711565 dcp2 dcp2 ENSONIP00000046810 ENSONIP00000046810 ctif ctif NCBP1 NCBP1 UPF1 UPF1 ENSONIP00000064179 ENSONIP00000064179 LOC100702413 LOC100702413 ENSONIP00000075314 ENSONIP00000075314 rbm8a rbm8a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (423 aa)
nbasNeuroblastoma amplified sequence. (2373 aa)
dcp1aDecapping mRNA 1A. (515 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (464 aa)
Helz2Uncharacterized protein. (578 aa)
smg1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3640 aa)
smg6SMG6 nonsense mediated mRNA decay factor. (1649 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (463 aa)
casc3Casc3 exon junction complex subunit. (817 aa)
LOC100693655Uncharacterized protein. (1109 aa)
skiv2lSKI2 homolog, superkiller viralicidic activity 2-like. (1244 aa)
Smg8SMG8 nonsense mediated mRNA decay factor. (917 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1275 aa)
magohMago homolog, exon junction complex subunit. (147 aa)
pnrc2Proline-rich nuclear receptor coactivator 2. (156 aa)
I3JWP1_ORENISMG9 nonsense mediated mRNA decay factor. (363 aa)
etf1Eukaryotic translation termination factor 1b. (439 aa)
ENSONIP00000031680Nuclear cap-binding protein subunit 2-like. (120 aa)
pym1PYM homolog 1, exon junction complex associated factor. (214 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1193 aa)
LOC100711565MRNA-decapping enzyme 1B. (650 aa)
dcp2M7GpppN-mRNA hydrolase isoform X1. (391 aa)
ENSONIP00000046810Nuclear cap-binding protein subunit 2-like. (91 aa)
ctifCBP80/20-dependent translation initiation factor. (696 aa)
NCBP1Nuclear cap binding protein subunit 1. (816 aa)
UPF1UPF1 RNA helicase and ATPase. (1118 aa)
ENSONIP00000064179Protein SMG9. (258 aa)
LOC100702413Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
ENSONIP00000075314annotation not available (120 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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