33 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102080283	Uncharacterized protein LOC102080283. (549 aa)
	elob	Ubiquitin-like domain-containing protein. (122 aa)
	leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (607 aa)
	I3IV18_ORENI	Transcription elongation factor A (SII), 2. (304 aa)
	cdk12	Cyclin-dependent kinase 12. (1351 aa)
	LOC100706200	Uncharacterized protein. (618 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (547 aa)
	LOC100703490	Uncharacterized protein. (603 aa)
	setd2	SET domain containing 2, histone lysine methyltransferase. (2602 aa)
	Ell	Elongation factor RNA polymerase II. (677 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	supt6h	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1747 aa)
	LOC100710822	Cyclin-dependent kinase 13. (1417 aa)
	pcid2	PCI domain containing 2. (399 aa)
	LOC100696598	Elongin A, like. (627 aa)
	I3JU14_ORENI	Elongin B. (114 aa)
	supt16h	SPT16 homolog, facilitates chromatin remodeling subunit. (1109 aa)
	paf1	PAF1 homolog, Paf1/RNA polymerase II complex component. (402 aa)
	LOC100692326	Si:ch211-13k12.2. (599 aa)
	eloa	Elongin A. (663 aa)
	supt5h	Transcription elongation factor SPT5. (1087 aa)
	tcea1	Transcription elongation factor A (SII), 1. (344 aa)
	eny2	Enhancer of yellow 2 transcription factor. (95 aa)
	ell2	Elongation factor, RNA polymerase II, 2. (668 aa)
	LOC109198557	Immune-associated nucleotide-binding protein 13. (557 aa)
	LOC100701647	Transcription elongation factor 1 homolog. (104 aa)
	wdr61	WD repeat domain 61. (305 aa)
	cdc73	Ro60, Y RNA binding protein. (530 aa)
	LOC100694417	Transcription and mRNA export factor ENY2-2. (96 aa)
	I3JI35_ORENI	Transcription elongation factor A (SII), 3. (423 aa)
	rtf1	RTF1 homolog, Paf1/RNA polymerase II complex component. (671 aa)
	ctr9	CTR9 homolog, Paf1/RNA polymerase II complex component. (1174 aa)
	ELOF1	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (90 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOF1	cdc73	ENSONIP00000079617	ENSONIP00000047370	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Ro60, Y RNA binding protein.	0.777
ELOF1	ctr9	ENSONIP00000079617	ENSONIP00000064063	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.532
ELOF1	leo1	ENSONIP00000079617	ENSONIP00000000228	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.830
ELOF1	paf1	ENSONIP00000079617	ENSONIP00000016511	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.527
ELOF1	polr2i	ENSONIP00000079617	ENSONIP00000006783	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.572
ELOF1	rtf1	ENSONIP00000079617	ENSONIP00000060804	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	RTF1 homolog, Paf1/RNA polymerase II complex component.	0.547
ELOF1	supt16h	ENSONIP00000079617	ENSONIP00000015756	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.704
ELOF1	supt5h	ENSONIP00000079617	ENSONIP00000028264	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Transcription elongation factor SPT5.	0.914
ELOF1	supt6h	ENSONIP00000079617	ENSONIP00000006924	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.667
Ell	I3IV18_ORENI	ENSONIP00000006003	ENSONIP00000000458	Elongation factor RNA polymerase II.	Transcription elongation factor A (SII), 2.	0.567
Ell	I3JI35_ORENI	ENSONIP00000006003	ENSONIP00000060560	Elongation factor RNA polymerase II.	Transcription elongation factor A (SII), 3.	0.567
Ell	I3JU14_ORENI	ENSONIP00000006003	ENSONIP00000012359	Elongation factor RNA polymerase II.	Elongin B.	0.598
Ell	LOC100696598	ENSONIP00000006003	ENSONIP00000012192	Elongation factor RNA polymerase II.	Elongin A, like.	0.679
Ell	LOC100710822	ENSONIP00000006003	ENSONIP00000008028	Elongation factor RNA polymerase II.	Cyclin-dependent kinase 13.	0.440
Ell	cdk12	ENSONIP00000006003	ENSONIP00000001285	Elongation factor RNA polymerase II.	Cyclin-dependent kinase 12.	0.440
Ell	ell2	ENSONIP00000006003	ENSONIP00000040235	Elongation factor RNA polymerase II.	Elongation factor, RNA polymerase II, 2.	0.436
Ell	eloa	ENSONIP00000006003	ENSONIP00000022374	Elongation factor RNA polymerase II.	Elongin A.	0.679
Ell	elob	ENSONIP00000006003	ENSONIP00000014508	Elongation factor RNA polymerase II.	Ubiquitin-like domain-containing protein.	0.598
Ell	gtf2f1	ENSONIP00000006003	ENSONIP00000002571	Elongation factor RNA polymerase II.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.507
Ell	leo1	ENSONIP00000006003	ENSONIP00000000228	Elongation factor RNA polymerase II.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.420