44 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	alyref	Aly/REF export factor. (278 aa)
	sarnp	SAP domain containing ribonucleoprotein. (210 aa)
	NUP214	Nucleoporin 214. (1690 aa)
	nup155	Nucleoporin 155. (1365 aa)
	ythdc1	YTH domain containing 1. (681 aa)
	fyttd1	Uncharacterized protein. (319 aa)
	chtop	Chromatin target of PRMT1a. (235 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2364 aa)
	thoc6	THO complex 6. (394 aa)
	pcid2	PCI domain containing 2. (399 aa)
	I3JNS6_ORENI	Polymerase (DNA-directed), delta interacting protein 3. (422 aa)
	I3J8X5_ORENI	RRM domain-containing protein. (126 aa)
	LOC100709252	RRM domain-containing protein. (258 aa)
	alkbh5	AlkB homolog 5, RNA demethylase. (357 aa)
	LOC100693948	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (483 aa)
	SRSF3	Serine and arginine rich splicing factor 3b. (125 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (920 aa)
	mcm3ap	Minichromosome maintenance complex component 3 associated protein. (2275 aa)
	LOC100707688	Zgc:193690. (485 aa)
	LOC100694797	Translocated promoter region a, nuclear basket protein. (2505 aa)
	ENSONIP00000028854	annotation not available (347 aa)
	nxf1	Zgc:153681. (659 aa)
	thoc1	THO complex 1. (650 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (652 aa)
	Zc3h11a	Zinc finger CCCH-type containing 11A. (242 aa)
	eny2	Enhancer of yellow 2 transcription factor. (95 aa)
	Sem1	26S proteasome complex subunit SEM1. (60 aa)
	polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (509 aa)
	LOC100694417	Transcription and mRNA export factor ENY2-2. (96 aa)
	Thoc2	THO complex 2. (1503 aa)
	LOC100704968	Uncharacterized protein. (440 aa)
	thoc5	THO complex 5. (690 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (816 aa)
	thoc7	THO complex 7. (215 aa)
	rae1	Ribonucleic acid export 1. (398 aa)
	gle1	GLE1 RNA export mediator. (717 aa)
	nup160	Nucleoporin 160. (1399 aa)
	nup133	Nucleoporin 133. (1135 aa)
	DDX39A	DExD-box helicase 39A. (443 aa)
	thoc3	THO complex 3. (327 aa)
	LOC100701675	Uncharacterized protein LOC100701675. (525 aa)
	ENSONIP00000028580	annotation not available (83 aa)
	LOC100711348	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B. (455 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX39A	I3J8X5_ORENI	ENSONIP00000068117	ENSONIP00000005315	DExD-box helicase 39A.	RRM domain-containing protein.	0.659
DDX39A	I3JNS6_ORENI	ENSONIP00000068117	ENSONIP00000010520	DExD-box helicase 39A.	Polymerase (DNA-directed), delta interacting protein 3.	0.859
DDX39A	LOC100694417	ENSONIP00000068117	ENSONIP00000052019	DExD-box helicase 39A.	Transcription and mRNA export factor ENY2-2.	0.470
DDX39A	LOC100709252	ENSONIP00000068117	ENSONIP00000004137	DExD-box helicase 39A.	RRM domain-containing protein.	0.921
DDX39A	NCBP1	ENSONIP00000068117	ENSONIP00000058989	DExD-box helicase 39A.	Nuclear cap binding protein subunit 1.	0.789
DDX39A	NUP214	ENSONIP00000068117	ENSONIP00000018851	DExD-box helicase 39A.	Nucleoporin 214.	0.557
DDX39A	SRSF3	ENSONIP00000068117	ENSONIP00000023849	DExD-box helicase 39A.	Serine and arginine rich splicing factor 3b.	0.659
DDX39A	Thoc2	ENSONIP00000068117	ENSONIP00000052051	DExD-box helicase 39A.	THO complex 2.	0.959
DDX39A	Zc3h11a	ENSONIP00000068117	ENSONIP00000036820	DExD-box helicase 39A.	Zinc finger CCCH-type containing 11A.	0.603
DDX39A	alyref	ENSONIP00000068117	ENSONIP00000024463	DExD-box helicase 39A.	Aly/REF export factor.	0.945
DDX39A	chtop	ENSONIP00000068117	ENSONIP00000013028	DExD-box helicase 39A.	Chromatin target of PRMT1a.	0.822
DDX39A	eny2	ENSONIP00000068117	ENSONIP00000038757	DExD-box helicase 39A.	Enhancer of yellow 2 transcription factor.	0.470
DDX39A	gle1	ENSONIP00000068117	ENSONIP00000061396	DExD-box helicase 39A.	GLE1 RNA export mediator.	0.596
DDX39A	mcm3ap	ENSONIP00000068117	ENSONIP00000021214	DExD-box helicase 39A.	Minichromosome maintenance complex component 3 associated protein.	0.655
DDX39A	nup107	ENSONIP00000068117	ENSONIP00000022679	DExD-box helicase 39A.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.405
DDX39A	nup155	ENSONIP00000068117	ENSONIP00000017656	DExD-box helicase 39A.	Nucleoporin 155.	0.403
DDX39A	nxf1	ENSONIP00000068117	ENSONIP00000035779	DExD-box helicase 39A.	Zgc:153681.	0.737
DDX39A	pcid2	ENSONIP00000068117	ENSONIP00000011302	DExD-box helicase 39A.	PCI domain containing 2.	0.471
DDX39A	rae1	ENSONIP00000068117	ENSONIP00000060501	DExD-box helicase 39A.	Ribonucleic acid export 1.	0.709
DDX39A	sarnp	ENSONIP00000068117	ENSONIP00000020808	DExD-box helicase 39A.	SAP domain containing ribonucleoprotein.	0.951