22 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100691333	40S ribosomal protein S27. (93 aa)
	rps9	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
	rps5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (224 aa)
	ENSONIP00000041950	Ribosomal protein S28. (63 aa)
	rps6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
	RPS29	Ribosomal protein S29. (60 aa)
	rps23	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (161 aa)
	dhx29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1376 aa)
	rps21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (94 aa)
	mrps11	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (212 aa)
	eif2a	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (629 aa)
	ENSONIP00000032299	annotation not available (85 aa)
	ENSONIP00000031770	annotation not available (203 aa)
	ENSONIP00000076314	Small subunit ribosomal protein S27e. (84 aa)
	ENSONIP00000072598	annotation not available (145 aa)
	LOC100705775	40S ribosomal protein S27 isoform X2. (92 aa)
	I3KL14_ORENI	Eukaryotic translation initiation factor 2D. (591 aa)
	fau	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (279 aa)
	LOC100707344	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (312 aa)
	rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (149 aa)
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000031770	ENSONIP00000032299	ENSONIP00000031770	ENSONIP00000032299	annotation not available	annotation not available	0.967
ENSONIP00000031770	ENSONIP00000041950	ENSONIP00000031770	ENSONIP00000041950	annotation not available	Ribosomal protein S28.	0.967
ENSONIP00000031770	ENSONIP00000076314	ENSONIP00000031770	ENSONIP00000076314	annotation not available	Small subunit ribosomal protein S27e.	0.928
ENSONIP00000031770	I3KL14_ORENI	ENSONIP00000031770	ENSONIP00000053335	annotation not available	Eukaryotic translation initiation factor 2D.	0.524
ENSONIP00000031770	LOC100691333	ENSONIP00000031770	ENSONIP00000040768	annotation not available	40S ribosomal protein S27.	0.958
ENSONIP00000031770	LOC100705775	ENSONIP00000031770	ENSONIP00000057960	annotation not available	40S ribosomal protein S27 isoform X2.	0.958
ENSONIP00000031770	LOC100707344	ENSONIP00000031770	ENSONIP00000031418	annotation not available	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family.	0.991
ENSONIP00000031770	RPS29	ENSONIP00000031770	ENSONIP00000079945	annotation not available	Ribosomal protein S29.	0.987
ENSONIP00000031770	fau	ENSONIP00000031770	ENSONIP00000001083	annotation not available	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
ENSONIP00000031770	mrps11	ENSONIP00000031770	ENSONIP00000039359	annotation not available	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.925
ENSONIP00000031770	rps2	ENSONIP00000031770	ENSONIP00000002909	annotation not available	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.990
ENSONIP00000031770	rps21	ENSONIP00000031770	ENSONIP00000040171	annotation not available	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.988
ENSONIP00000031770	rps23	ENSONIP00000031770	ENSONIP00000081239	annotation not available	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.989
ENSONIP00000031770	rps26	ENSONIP00000031770	ENSONIP00000024003	annotation not available	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.990
ENSONIP00000031770	rps5	ENSONIP00000031770	ENSONIP00000044853	annotation not available	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.989
ENSONIP00000031770	rps6	ENSONIP00000031770	ENSONIP00000079681	annotation not available	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.990
ENSONIP00000031770	rps9	ENSONIP00000031770	ENSONIP00000049626	annotation not available	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.988
ENSONIP00000032299	ENSONIP00000031770	ENSONIP00000032299	ENSONIP00000031770	annotation not available	annotation not available	0.967
ENSONIP00000032299	ENSONIP00000072598	ENSONIP00000032299	ENSONIP00000072598	annotation not available	annotation not available	0.967
ENSONIP00000032299	ENSONIP00000076314	ENSONIP00000032299	ENSONIP00000076314	annotation not available	Small subunit ribosomal protein S27e.	0.966