(13 nodes) Platelet formation network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100700725	E1A binding protein p300 b. (2799 aa)
	LOC112841626	Erythroid transcription factor-like isoform X1. (280 aa)
	Vps33a	VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family. (615 aa)
	LOC100700918	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (595 aa)
	SRF	Serum response factor. (597 aa)
	I3JWF9_ORENI	MADS-box domain-containing protein. (506 aa)
	nbeal1	Neurobeachin-like 1. (2757 aa)
	cib1	Calcium and integrin binding 1 (calmyrin). (189 aa)
	LOC100696076	GATA binding protein 1a. (457 aa)
	nbeal2	Neurobeachin-like 2. (2774 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (616 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (590 aa)
	LOC100698988	E1A binding protein p300 a. (2777 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100696076	LOC100698988	ENSONIP00000038387	ENSONIP00000072968	GATA binding protein 1a.	E1A binding protein p300 a.	0.664
LOC100696076	LOC100700725	ENSONIP00000038387	ENSONIP00000075311	GATA binding protein 1a.	E1A binding protein p300 b.	0.664
LOC100698988	LOC100696076	ENSONIP00000072968	ENSONIP00000038387	E1A binding protein p300 a.	GATA binding protein 1a.	0.664
LOC100698988	LOC112841626	ENSONIP00000072968	ENSONIP00000080130	E1A binding protein p300 a.	Erythroid transcription factor-like isoform X1.	0.664
LOC100700725	LOC100696076	ENSONIP00000075311	ENSONIP00000038387	E1A binding protein p300 b.	GATA binding protein 1a.	0.664
LOC100700725	LOC112841626	ENSONIP00000075311	ENSONIP00000080130	E1A binding protein p300 b.	Erythroid transcription factor-like isoform X1.	0.664
LOC100700918	ptpn11	ENSONIP00000011686	ENSONIP00000071113	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.901
LOC112841626	LOC100698988	ENSONIP00000080130	ENSONIP00000072968	Erythroid transcription factor-like isoform X1.	E1A binding protein p300 a.	0.664
LOC112841626	LOC100700725	ENSONIP00000080130	ENSONIP00000075311	Erythroid transcription factor-like isoform X1.	E1A binding protein p300 b.	0.664
ptpn11	LOC100700918	ENSONIP00000071113	ENSONIP00000011686	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.901