23 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nsun4	NOP2/Sun RNA methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (392 aa)
	emg1	EMG1 N1-specific pseudouridine methyltransferase. (237 aa)
	Nop2	NOP2 nucleolar protein homolog (yeast); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (587 aa)
	tfb2m	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (453 aa)
	LOC100691285	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (538 aa)
	Mrm1	Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae). (295 aa)
	ENSONIP00000078615	Methyltransferase like 15. (306 aa)
	nsun3	NOP2/Sun RNA methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (464 aa)
	mettl16	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (590 aa)
	Trmt61b	TRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit. (385 aa)
	mettl5	Methyltransferase like 5. (208 aa)
	dimt1	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (309 aa)
	zcchc4	Zinc finger, CCHC domain containing 4. (502 aa)
	Rrnad1	Ribosomal RNA adenine dimethylase domain containing 1. (572 aa)
	ftsj3	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (858 aa)
	Nsun5	NOP2/Sun RNA methyltransferase 5; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (482 aa)
	mrm2	Mitochondrial rRNA methyltransferase 2. (239 aa)
	mettl15	Methyltransferase like 15. (389 aa)
	bud23	BUD23 rRNA methyltransferase and ribosome maturation factor. (282 aa)
	fdxacb1	Ferredoxin-fold anticodon binding domain containing 1. (639 aa)
	trmt112	tRNA methyltransferase subunit 11-2. (123 aa)
	fbl	Fibrillarin. (320 aa)
	tfb1m	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (358 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000078615	LOC100691285	ENSONIP00000078615	ENSONIP00000023294	Methyltransferase like 15.	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.441
ENSONIP00000078615	mettl16	ENSONIP00000078615	ENSONIP00000064106	Methyltransferase like 15.	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	0.438
ENSONIP00000078615	mettl5	ENSONIP00000078615	ENSONIP00000032237	Methyltransferase like 15.	Methyltransferase like 5.	0.450
ENSONIP00000078615	mrm2	ENSONIP00000078615	ENSONIP00000070098	Methyltransferase like 15.	Mitochondrial rRNA methyltransferase 2.	0.416
LOC100691285	ENSONIP00000078615	ENSONIP00000023294	ENSONIP00000078615	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Methyltransferase like 15.	0.441
LOC100691285	Mrm1	ENSONIP00000023294	ENSONIP00000026538	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae).	0.516
LOC100691285	Nop2	ENSONIP00000023294	ENSONIP00000016227	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	NOP2 nucleolar protein homolog (yeast); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.586
LOC100691285	Nsun5	ENSONIP00000023294	ENSONIP00000002393	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	NOP2/Sun RNA methyltransferase 5; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.587
LOC100691285	Trmt61b	ENSONIP00000023294	ENSONIP00000046126	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	TRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit.	0.685
LOC100691285	dimt1	ENSONIP00000023294	ENSONIP00000029600	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.553
LOC100691285	emg1	ENSONIP00000023294	ENSONIP00000016224	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	EMG1 N1-specific pseudouridine methyltransferase.	0.463
LOC100691285	fdxacb1	ENSONIP00000023294	ENSONIP00000006212	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Ferredoxin-fold anticodon binding domain containing 1.	0.431
LOC100691285	ftsj3	ENSONIP00000023294	ENSONIP00000002074	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.597
LOC100691285	mettl15	ENSONIP00000023294	ENSONIP00000003731	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Methyltransferase like 15.	0.441
LOC100691285	mrm2	ENSONIP00000023294	ENSONIP00000070098	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Mitochondrial rRNA methyltransferase 2.	0.487
LOC100691285	nsun3	ENSONIP00000023294	ENSONIP00000064185	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	NOP2/Sun RNA methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.410
LOC100691285	nsun4	ENSONIP00000023294	ENSONIP00000013249	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	NOP2/Sun RNA methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.410
LOC100691285	tfb1m	ENSONIP00000023294	ENSONIP00000010213	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.471
LOC100691285	tfb2m	ENSONIP00000023294	ENSONIP00000021589	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.506
LOC100691285	trmt112	ENSONIP00000023294	ENSONIP00000006769	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	tRNA methyltransferase subunit 11-2.	0.467