STRINGSTRING
tbl3 tbl3 rrp9 rrp9 tsr1 tsr1 utp25 utp25 bms1 bms1 dhx37 dhx37 Snu13 Snu13 xrcc5 xrcc5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tbl3Transducin (beta)-like 3. (930 aa)
rrp9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (481 aa)
tsr1TSR1 ribosome maturation factor. (835 aa)
utp25UTP25 small subunit processor component. (648 aa)
bms1BMS1 ribosome biogenesis factor. (1209 aa)
dhx37DEAH (Asp-Glu-Ala-His) box polypeptide 37. (1150 aa)
Snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (221 aa)
xrcc5X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (746 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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