9 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	prmt5	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (635 aa)
	wdr77	WD_REPEATS_REGION domain-containing protein. (334 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (256 aa)
	clns1a	Chloride channel, nucleotide-sensitive, 1A. (244 aa)
	Snrpf	Small nuclear ribonucleoprotein F. (85 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (110 aa)
	snrpe	Small nuclear ribonucleoprotein E. (92 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Snrpf	clns1a	ENSONIP00000068044	ENSONIP00000067850	Small nuclear ribonucleoprotein F.	Chloride channel, nucleotide-sensitive, 1A.	0.905
Snrpf	prmt5	ENSONIP00000068044	ENSONIP00000019552	Small nuclear ribonucleoprotein F.	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.425
Snrpf	snrpb	ENSONIP00000068044	ENSONIP00000056472	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein-associated protein.	0.998
Snrpf	snrpd1	ENSONIP00000068044	ENSONIP00000068638	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
Snrpf	snrpd2	ENSONIP00000068044	ENSONIP00000054582	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein Sm D2.	0.999
Snrpf	snrpd3	ENSONIP00000068044	ENSONIP00000004821	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein Sm D3.	0.999
Snrpf	snrpe	ENSONIP00000068044	ENSONIP00000072391	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein E.	0.999
Snrpf	wdr77	ENSONIP00000068044	ENSONIP00000023876	Small nuclear ribonucleoprotein F.	WD_REPEATS_REGION domain-containing protein.	0.463
clns1a	Snrpf	ENSONIP00000067850	ENSONIP00000068044	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein F.	0.905
clns1a	prmt5	ENSONIP00000067850	ENSONIP00000019552	Chloride channel, nucleotide-sensitive, 1A.	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.987
clns1a	snrpb	ENSONIP00000067850	ENSONIP00000056472	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein-associated protein.	0.772
clns1a	snrpd1	ENSONIP00000067850	ENSONIP00000068638	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.995
clns1a	snrpd2	ENSONIP00000067850	ENSONIP00000054582	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D2.	0.934
clns1a	snrpd3	ENSONIP00000067850	ENSONIP00000004821	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein Sm D3.	0.949
clns1a	snrpe	ENSONIP00000067850	ENSONIP00000072391	Chloride channel, nucleotide-sensitive, 1A.	Small nuclear ribonucleoprotein E.	0.920
clns1a	wdr77	ENSONIP00000067850	ENSONIP00000023876	Chloride channel, nucleotide-sensitive, 1A.	WD_REPEATS_REGION domain-containing protein.	0.977
prmt5	Snrpf	ENSONIP00000019552	ENSONIP00000068044	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	Small nuclear ribonucleoprotein F.	0.425
prmt5	clns1a	ENSONIP00000019552	ENSONIP00000067850	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	Chloride channel, nucleotide-sensitive, 1A.	0.987
prmt5	snrpb	ENSONIP00000019552	ENSONIP00000056472	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	Small nuclear ribonucleoprotein-associated protein.	0.634
prmt5	snrpd1	ENSONIP00000019552	ENSONIP00000068638	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.841