(23 nodes) Monoubiquitinated protein deubiquitination network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	usp1	Ubiquitin carboxyl-terminal hydrolase. (830 aa)
	ENSONIP00000050901	annotation not available (96 aa)
	taf6l	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (639 aa)
	supt7l	SPT7 like, STAGA complex gamma subunit. (536 aa)
	ENSONIP00000038409	annotation not available (370 aa)
	LOC102077544	SCA7 domain-containing protein. (605 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	atxn7	Ataxin 7. (940 aa)
	TADA1	Transcriptional adaptor 1. (336 aa)
	taf12	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (162 aa)
	usp7	Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1115 aa)
	bap1	Ubiquitin carboxyl-terminal hydrolase. (743 aa)
	sgf29	SAGA complex associated factor 29. (290 aa)
	LOC100707057	Ataxin 7-like 2a. (764 aa)
	usp47	Ubiquitin specific peptidase 47; Belongs to the peptidase C19 family. (1383 aa)
	taf10	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (186 aa)
	supt3h	SPT3 homolog, SAGA and STAGA complex component. (396 aa)
	taf5l	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (600 aa)
	ENSONIP00000073758	annotation not available (740 aa)
	trrap	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family. (3844 aa)
	taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (792 aa)
	taf6	Transcription initiation factor TFIID subunit 6. (695 aa)
	mysm1	Myb-like, SWIRM and MPN domains 1. (916 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000038409	ENSONIP00000050901	ENSONIP00000038409	ENSONIP00000050901	annotation not available	annotation not available	0.712
ENSONIP00000038409	ENSONIP00000073758	ENSONIP00000038409	ENSONIP00000073758	annotation not available	annotation not available	0.712
ENSONIP00000038409	LOC100707057	ENSONIP00000038409	ENSONIP00000010958	annotation not available	Ataxin 7-like 2a.	0.712
ENSONIP00000038409	LOC102077544	ENSONIP00000038409	ENSONIP00000033580	annotation not available	SCA7 domain-containing protein.	0.712
ENSONIP00000038409	TADA1	ENSONIP00000038409	ENSONIP00000023468	annotation not available	Transcriptional adaptor 1.	0.690
ENSONIP00000038409	atxn7	ENSONIP00000038409	ENSONIP00000025657	annotation not available	Ataxin 7.	0.712
ENSONIP00000038409	sf3b5	ENSONIP00000038409	ENSONIP00000026030	annotation not available	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.639
ENSONIP00000038409	sgf29	ENSONIP00000038409	ENSONIP00000011784	annotation not available	SAGA complex associated factor 29.	0.922
ENSONIP00000038409	supt3h	ENSONIP00000038409	ENSONIP00000058665	annotation not available	SPT3 homolog, SAGA and STAGA complex component.	0.935
ENSONIP00000038409	supt7l	ENSONIP00000038409	ENSONIP00000041797	annotation not available	SPT7 like, STAGA complex gamma subunit.	0.834
ENSONIP00000038409	taf10	ENSONIP00000038409	ENSONIP00000002566	annotation not available	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.970
ENSONIP00000038409	taf12	ENSONIP00000038409	ENSONIP00000020370	annotation not available	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.971
ENSONIP00000038409	taf5	ENSONIP00000038409	ENSONIP00000080090	annotation not available	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.953
ENSONIP00000038409	taf5l	ENSONIP00000038409	ENSONIP00000062114	annotation not available	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.941
ENSONIP00000038409	trrap	ENSONIP00000038409	ENSONIP00000078887	annotation not available	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.943
ENSONIP00000050901	ENSONIP00000038409	ENSONIP00000050901	ENSONIP00000038409	annotation not available	annotation not available	0.712
ENSONIP00000050901	TADA1	ENSONIP00000050901	ENSONIP00000023468	annotation not available	Transcriptional adaptor 1.	0.525
ENSONIP00000050901	sf3b5	ENSONIP00000050901	ENSONIP00000026030	annotation not available	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.560
ENSONIP00000050901	sgf29	ENSONIP00000050901	ENSONIP00000011784	annotation not available	SAGA complex associated factor 29.	0.795
ENSONIP00000050901	supt3h	ENSONIP00000050901	ENSONIP00000058665	annotation not available	SPT3 homolog, SAGA and STAGA complex component.	0.843