45 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdc6	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (604 aa)
	aamp	Angio-associated, migratory cell protein. (485 aa)
	wapl	WAPL cohesin release factor a. (1171 aa)
	KCNV1	Potassium voltage-gated channel modifier subfamily V member 1; Belongs to the potassium channel family. (483 aa)
	klhdc8b	Kelch domain containing 8B. (354 aa)
	esrra	Estrogen-related receptor alpha. (433 aa)
	I3JAX3_ORENI	Uncharacterized protein. (390 aa)
	LOC100711338	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (796 aa)
	kif20a	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (907 aa)
	mtus2	Uncharacterized protein. (346 aa)
	LOC100703328	Si:dkey-16l2.16. (208 aa)
	I3JVK2_ORENI	Zona pellucida glycoprotein d. (360 aa)
	Cdc7	Cell division cycle 7 homolog (S. cerevisiae). (581 aa)
	trim45	Tripartite motif containing 45. (591 aa)
	LOC100708025	Cytohesin 4b. (405 aa)
	Sra1	SRA1 domain-containing protein. (240 aa)
	parp3	Poly [ADP-ribose] polymerase. (539 aa)
	LOC100689885	CAP-Gly domain-containing protein. (1274 aa)
	LOC100709732	Olfactomedin-like domain-containing protein. (463 aa)
	I3KWE7_ORENI	Si:ch211-173a9.6. (426 aa)
	Rbm44	RNA-binding protein 44 isoform X1. (789 aa)
	unc119	Unc-119 lipid binding chaperone. (207 aa)
	ENSONIP00000034183	annotation not available (178 aa)
	krr1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (393 aa)
	LOC100707086	Kelch domain containing 8A. (476 aa)
	LOC102080373	Uncharacterized protein LOC102080373 isoform X1. (1020 aa)
	Kif20b	Kinesin-like protein KIF20B isoform X1. (1892 aa)
	rbm18	RNA binding motif protein 18. (200 aa)
	I3KU39_ORENI	Dynactin 1b. (1239 aa)
	ENSONIP00000047722	annotation not available (907 aa)
	LOC100712474	WAPL cohesin release factor b. (1237 aa)
	I3JC34_ORENI	Pleckstrin homology-like domain, family B, member 2a. (979 aa)
	LOC100699756	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1335 aa)
	eaf1	ELL associated factor 1. (292 aa)
	prc1	Protein regulator of cytokinesis 1b. (610 aa)
	snrnp25	Small nuclear ribonucleoprotein 25. (187 aa)
	rab35	RAB35, member RAS oncogene family b. (201 aa)
	nudcd2	NudC domain containing 2. (157 aa)
	LOC102077463	Hematopoietic progenitor cell antigen CD34. (342 aa)
	cd164	Sialomucin core protein 24 isoform X1. (176 aa)
	cenpe	Centromere-associated protein E isoform X1. (2524 aa)
	rfxank	Regulatory factor X-associated ankyrin-containing protein. (313 aa)
	LOC100702271	GMP_PDE_delta domain-containing protein. (256 aa)
	LOC100693066	Protein regulator of cytokinesis 1a. (617 aa)
	iqcb1	IQ motif containing B1. (644 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdc7	cdc6	ENSONIP00000013311	ENSONIP00000000081	Cell division cycle 7 homolog (S. cerevisiae).	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.	0.945
ENSONIP00000034183	LOC100693066	ENSONIP00000034183	ENSONIP00000078644	annotation not available	Protein regulator of cytokinesis 1a.	0.564
ENSONIP00000034183	cenpe	ENSONIP00000034183	ENSONIP00000075244	annotation not available	Centromere-associated protein E isoform X1.	0.682
ENSONIP00000034183	prc1	ENSONIP00000034183	ENSONIP00000059246	annotation not available	Protein regulator of cytokinesis 1b.	0.564
ENSONIP00000047722	I3JAX3_ORENI	ENSONIP00000047722	ENSONIP00000006013	annotation not available	Uncharacterized protein.	0.870
ENSONIP00000047722	I3KU39_ORENI	ENSONIP00000047722	ENSONIP00000044114	annotation not available	Dynactin 1b.	0.473
ENSONIP00000047722	LOC100689885	ENSONIP00000047722	ENSONIP00000025091	annotation not available	CAP-Gly domain-containing protein.	0.473
ENSONIP00000047722	cenpe	ENSONIP00000047722	ENSONIP00000075244	annotation not available	Centromere-associated protein E isoform X1.	0.485
ENSONIP00000047722	mtus2	ENSONIP00000047722	ENSONIP00000007133	annotation not available	Uncharacterized protein.	0.732
I3JAX3_ORENI	ENSONIP00000047722	ENSONIP00000006013	ENSONIP00000047722	Uncharacterized protein.	annotation not available	0.870
I3JAX3_ORENI	I3KU39_ORENI	ENSONIP00000006013	ENSONIP00000044114	Uncharacterized protein.	Dynactin 1b.	0.473
I3JAX3_ORENI	LOC100689885	ENSONIP00000006013	ENSONIP00000025091	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.473
I3JAX3_ORENI	cenpe	ENSONIP00000006013	ENSONIP00000075244	Uncharacterized protein.	Centromere-associated protein E isoform X1.	0.485
I3KU39_ORENI	ENSONIP00000047722	ENSONIP00000044114	ENSONIP00000047722	Dynactin 1b.	annotation not available	0.473
I3KU39_ORENI	I3JAX3_ORENI	ENSONIP00000044114	ENSONIP00000006013	Dynactin 1b.	Uncharacterized protein.	0.473
I3KU39_ORENI	cenpe	ENSONIP00000044114	ENSONIP00000075244	Dynactin 1b.	Centromere-associated protein E isoform X1.	0.616
I3KU39_ORENI	mtus2	ENSONIP00000044114	ENSONIP00000007133	Dynactin 1b.	Uncharacterized protein.	0.473
Kif20b	LOC100693066	ENSONIP00000040040	ENSONIP00000078644	Kinesin-like protein KIF20B isoform X1.	Protein regulator of cytokinesis 1a.	0.564
Kif20b	cenpe	ENSONIP00000040040	ENSONIP00000075244	Kinesin-like protein KIF20B isoform X1.	Centromere-associated protein E isoform X1.	0.682
Kif20b	prc1	ENSONIP00000040040	ENSONIP00000059246	Kinesin-like protein KIF20B isoform X1.	Protein regulator of cytokinesis 1b.	0.564