STRINGSTRING
LOC100693209 LOC100693209 fmr1 fmr1 rcc1l rcc1l ENSONIP00000072225 ENSONIP00000072225 LOC100706170 LOC100706170 LOC100707769 LOC100707769 eif2s3 eif2s3 rps9 rps9 eif2b5 eif2b5 dhx9 dhx9 rmnd1 rmnd1 LOC100706107 LOC100706107 LOC100534578 LOC100534578 mif4gd mif4gd ngrn ngrn upf3b upf3b tent4b tent4b trmt10c trmt10c LOC100695900 LOC100695900 dhx36 dhx36 Dazl Dazl usp16 usp16 nck1 nck1 LOC100710732 LOC100710732 upf3a upf3a I3JJE8_ORENI I3JJE8_ORENI dhx29 dhx29 I3JNS6_ORENI I3JNS6_ORENI dnajc3 dnajc3 mtor mtor mettl3 mettl3 Cirbp Cirbp EIF4G1 EIF4G1 larp4 larp4 EIF2AK4 EIF2AK4 LOC100690925 LOC100690925 ythdf3 ythdf3 nck2 nck2 paip1 paip1 prr16 prr16 LOC100703711 LOC100703711 LOC100694444 LOC100694444 LOC100705797 LOC100705797 guf1 guf1 abcf1 abcf1 LOC100692547 LOC100692547 pink1 pink1 YTHDF1 YTHDF1 c1qbp c1qbp LARP4B LARP4B LOC100694078 LOC100694078 LOC100700156 LOC100700156 I3KSH5_ORENI I3KSH5_ORENI Cyp1c1 Cyp1c1 I3KYY8_ORENI I3KYY8_ORENI ucn ucn impact impact zcchc4 zcchc4 jmjd4 jmjd4 ENSONIP00000028977 ENSONIP00000028977 LOC100709667 LOC100709667 mettl5 mettl5 fastkd2 fastkd2 LOC100702923 LOC100702923 nat10 nat10 LOC100693558 LOC100693558 EIF5AL1 EIF5AL1 pym1 pym1 ENSONIP00000038375 ENSONIP00000038375 LOC100708012 LOC100708012 ENSONIP00000038958 ENSONIP00000038958 fxr1 fxr1 ENSONIP00000039537 ENSONIP00000039537 I3JS59_ORENI I3JS59_ORENI LOC100702133 LOC100702133 YTHDF1-2 YTHDF1-2 trub2 trub2 polr2g polr2g polr2d polr2d ctif ctif Uhmk1 Uhmk1 mrps27 mrps27 CDK5RAP1 CDK5RAP1 LOC100709560 LOC100709560 pcif1 pcif1 LOC100690783 LOC100690783 I3IW89_ORENI I3IW89_ORENI LOC100700271 LOC100700271 tent4a tent4a cyp1b1 cyp1b1 larp1 larp1 ENSONIP00000067658 ENSONIP00000067658 LOC100691710 LOC100691710
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100693209La ribonucleoprotein domain family, member 6a. (689 aa)
fmr1Fragile X mental retardation 1. (600 aa)
rcc1lRCC1 like. (451 aa)
ENSONIP00000072225annotation not available (91 aa)
LOC100706170CCHC-type zinc finger, nucleic acid binding protein b. (182 aa)
LOC100707769La-related protein 4B isoform X2. (477 aa)
eif2s3Eukaryotic translation initiation factor 2, subunit 3 gamma. (476 aa)
rps9Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
eif2b5Eukaryotic translation initiation factor 2B, subunit 5 epsilon. (709 aa)
dhx9DEAH (Asp-Glu-Ala-His) box helicase 9. (1288 aa)
rmnd1Required for meiotic nuclear division 1 homolog. (412 aa)
LOC100706107ELAV-like protein; Belongs to the RRM elav family. (361 aa)
LOC100534578Tumor necrosis factor b (TNF superfamily, member 2). (247 aa)
mif4gdMIF4G domain containing a. (221 aa)
ngrnNeugrin, neurite outgrowth associated. (307 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (464 aa)
tent4bTerminal nucleotidyltransferase 4B. (672 aa)
trmt10ctRNA methyltransferase 10C, mitochondrial RNase P subunit. (505 aa)
LOC100695900ELAV-like protein; Belongs to the RRM elav family. (359 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1064 aa)
DazlDeleted in azoospermia-like. (214 aa)
usp16Ubiquitin carboxyl-terminal hydrolase 16; Specifically deubiquitinates 'Lys-120' of histone H2A (H2AK119Ub), a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator. Deubiquitination of histone H2A is a prerequisite for subsequent phosphorylation at 'Ser-11' of histone H3 (H3S10ph), and is required for chromosome segregation when cells enter into mitosis. Regulates Hox gene expression via histone H2A deubiquitination. Prefers nucleosomal substrates. Does not deubiquitinate histone H2B. (859 aa)
nck1Cytoplasmic protein. (392 aa)
LOC100710732FAST kinase domains 3. (659 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (463 aa)
I3JJE8_ORENITerminal nucleotidyltransferase 4A. (702 aa)
dhx29ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1376 aa)
I3JNS6_ORENIPolymerase (DNA-directed), delta interacting protein 3. (422 aa)
dnajc3DnaJ (Hsp40) homolog, subfamily C, member 3a. (503 aa)
mtorSerine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2537 aa)
mettl3Methyltransferase like 3; Belongs to the MT-A70-like family. (594 aa)
CirbpCold inducible RNA binding protein b. (176 aa)
EIF4G1Eukaryotic translation initiation factor 4 gamma 1. (1739 aa)
larp4La ribonucleoprotein domain family, member 4Aa. (806 aa)
EIF2AK4Eukaryotic translation initiation factor 2 alpha kinase 4. (1662 aa)
LOC100690925La ribonucleoprotein domain family, member 1B. (1088 aa)
ythdf3YTH N(6)-methyladenosine RNA binding protein 3. (603 aa)
nck2Cytoplasmic protein. (398 aa)
paip1Poly(A) binding protein interacting protein 1. (448 aa)
prr16Proline rich 16. (334 aa)
LOC100703711Hyaluronan binding protein 4. (408 aa)
LOC100694444Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (472 aa)
LOC100705797RRM domain-containing protein. (334 aa)
guf1Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (675 aa)
abcf1ATP-binding cassette, sub-family F (GCN20), member 1. (819 aa)
LOC100692547Lin-28 homolog A. (202 aa)
pink1PTEN induced kinase 1. (574 aa)
YTHDF1YTH N(6)-methyladenosine RNA binding protein 1. (628 aa)
c1qbpComplement component 1, q subcomponent binding protein. (288 aa)
LARP4BLa ribonucleoprotein domain family member 4B. (770 aa)
LOC100694078Fragile X mental retardation, autosomal homolog 2. (672 aa)
LOC100700156Eukaryotic translation initiation factor 5A. (157 aa)
I3KSH5_ORENILa ribonucleoprotein domain family, member 4Ab. (329 aa)
Cyp1c1Cytochrome P450, family 1, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family. (570 aa)
I3KYY8_ORENICytochrome P450, family 1, subfamily C, polypeptide 2; Belongs to the cytochrome P450 family. (525 aa)
ucnUrotensin 1. (148 aa)
impactImpact RWD domain protein. (586 aa)
zcchc4Zinc finger, CCHC domain containing 4. (502 aa)
jmjd4Jumonji domain containing 4. (431 aa)
ENSONIP00000028977annotation not available (69 aa)
LOC100709667Cellular nucleic acid-binding protein isoform X1. (166 aa)
mettl5Methyltransferase like 5. (208 aa)
fastkd2FAST kinase domains 2. (667 aa)
LOC100702923NCK associated protein 5. (1773 aa)
nat10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1055 aa)
LOC100693558Ubiquinol-cytochrome c reductase complex assembly factor 2. (129 aa)
EIF5AL1Eukaryotic translation initiation factor 5A. (155 aa)
pym1PYM homolog 1, exon junction complex associated factor. (214 aa)
ENSONIP00000038375annotation not available (105 aa)
LOC100708012Cytochrome c oxidase assembly factor 3 homolog, mitochondrial. (100 aa)
ENSONIP00000038958RNA binding motif protein 4.2. (230 aa)
fxr1Fragile X mental retardation, autosomal homolog 1. (734 aa)
ENSONIP00000039537annotation not available (288 aa)
I3JS59_ORENIDnaJ (Hsp40) homolog, subfamily C, member 3b. (516 aa)
LOC100702133Forkhead box A3. (466 aa)
YTHDF1-2YTH N6-methyladenosine RNA binding protein 1. (616 aa)
trub2TruB pseudouridine (psi) synthase family member 2. (331 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (181 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (509 aa)
ctifCBP80/20-dependent translation initiation factor. (696 aa)
Uhmk1U2AF homology motif (UHM) kinase 1. (469 aa)
mrps27Mitochondrial ribosomal protein S27. (451 aa)
CDK5RAP1CDK5 regulatory subunit associated protein 1. (866 aa)
LOC100709560Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (530 aa)
pcif1PDX1 C-terminal inhibiting factor 1. (714 aa)
LOC100690783Uncharacterized protein. (1682 aa)
I3IW89_ORENIEukaryotic translation initiation factor 4 gamma, 3a. (1639 aa)
LOC100700271Eukaryotic translation initiation factor 5A. (153 aa)
tent4aTerminal nucleotidyltransferase 4A. (816 aa)
cyp1b1Cytochrome P450, family 1, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family. (543 aa)
larp1La ribonucleoprotein domain family, member 1. (1107 aa)
ENSONIP00000067658annotation not available (70 aa)
LOC100691710Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (515 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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