(20 nodes) Beta-tubulin binding network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tbca	Tubulin-specific chaperone A; Belongs to the TBCA family. (108 aa)
	LRPPRC	Leucine-rich pentatricopeptide repeat containing. (1470 aa)
	adnp	Activity-dependent neuroprotector homeobox b. (1058 aa)
	dlec1	DLEC1 cilia and flagella associated protein. (1706 aa)
	casc1	Cancer susceptibility candidate 1. (678 aa)
	uxt	Ubiquitously-expressed, prefoldin-like chaperone. (160 aa)
	smc3	Structural maintenance of chromosomes protein. (1223 aa)
	racgap1	Rac GTPase activating protein 1. (648 aa)
	ift74	Intraflagellar transport 74. (608 aa)
	tbcd	Tubulin folding cofactor D. (1198 aa)
	bcas3	BCAS3 microtubule associated cell migration factor. (995 aa)
	Pex14	Peroxisomal biogenesis factor 14. (402 aa)
	bbs4	Bardet-Biedl syndrome 4. (539 aa)
	pacrg	PARK2 co-regulated. (242 aa)
	htt	Huntingtin. (3191 aa)
	ttll7	Tubulin tyrosine ligase-like family, member 7. (931 aa)
	cct5	Chaperonin containing TCP1, subunit 5 (epsilon). (541 aa)
	LOC100704408	Uncharacterized protein. (634 aa)
	I3KSL0_ORENI	Si:ch1073-416j23.1. (397 aa)
	I3JUV2_ORENI	Spastin; Belongs to the AAA ATPase family. (495 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3JUV2_ORENI	Pex14	ENSONIP00000012647	ENSONIP00000053287	Spastin; Belongs to the AAA ATPase family.	Peroxisomal biogenesis factor 14.	0.529
LRPPRC	uxt	ENSONIP00000001161	ENSONIP00000077082	Leucine-rich pentatricopeptide repeat containing.	Ubiquitously-expressed, prefoldin-like chaperone.	0.401
Pex14	I3JUV2_ORENI	ENSONIP00000053287	ENSONIP00000012647	Peroxisomal biogenesis factor 14.	Spastin; Belongs to the AAA ATPase family.	0.529
bbs4	ift74	ENSONIP00000052952	ENSONIP00000068001	Bardet-Biedl syndrome 4.	Intraflagellar transport 74.	0.649
ift74	bbs4	ENSONIP00000068001	ENSONIP00000052952	Intraflagellar transport 74.	Bardet-Biedl syndrome 4.	0.649
ift74	tbcd	ENSONIP00000068001	ENSONIP00000056693	Intraflagellar transport 74.	Tubulin folding cofactor D.	0.454
tbca	tbcd	ENSONIP00000019461	ENSONIP00000056693	Tubulin-specific chaperone A; Belongs to the TBCA family.	Tubulin folding cofactor D.	0.770
tbcd	ift74	ENSONIP00000056693	ENSONIP00000068001	Tubulin folding cofactor D.	Intraflagellar transport 74.	0.454
tbcd	tbca	ENSONIP00000056693	ENSONIP00000019461	Tubulin folding cofactor D.	Tubulin-specific chaperone A; Belongs to the TBCA family.	0.770
uxt	LRPPRC	ENSONIP00000077082	ENSONIP00000001161	Ubiquitously-expressed, prefoldin-like chaperone.	Leucine-rich pentatricopeptide repeat containing.	0.401