STRINGSTRING
thoc3 thoc3 Sec13 Sec13 rbm8a rbm8a ENSONIP00000075314 ENSONIP00000075314 LOC100701675 LOC100701675 nup58 nup58 fmr1 fmr1 LOC100702413 LOC100702413 ENSONIP00000068295 ENSONIP00000068295 DDX39A DDX39A LOC100703030 LOC100703030 nup133 nup133 slbp slbp LOC100700271 LOC100700271 nup160 nup160 gle1 gle1 LOC100703095 LOC100703095 I3JJF1_ORENI I3JJF1_ORENI rae1 rae1 nxt2 nxt2 thoc7 thoc7 NCBP1 NCBP1 nup93 nup93 thoc5 thoc5 LOC100704968 LOC100704968 NUP54 NUP54 LOC100704495 LOC100704495 cetn3 cetn3 Thoc2 Thoc2 LOC100694417 LOC100694417 I3JG28_ORENI I3JG28_ORENI nup37 nup37 LOC100692890 LOC100692890 polr2d polr2d eif4a3 eif4a3 nup42 nup42 qki qki lrmp lrmp ENSONIP00000046810 ENSONIP00000046810 seh1l seh1l kpnb1 kpnb1 igf2bp3 igf2bp3 ENSONIP00000045384 ENSONIP00000045384 rftn1 rftn1 sidt2 sidt2 Sem1 Sem1 eny2 eny2 nol6 nol6 ybx1 ybx1 EIF5AL1 EIF5AL1 Zc3h11a Zc3h11a nup85 nup85 thoc1 thoc1 nxf1 nxf1 ENSONIP00000031680 ENSONIP00000031680 ran ran I3IYS3_ORENI I3IYS3_ORENI ENSONIP00000028854 ENSONIP00000028854 ssb ssb ENSONIP00000028580 ENSONIP00000028580 LOC100711348 LOC100711348 nup88 nup88 phax phax TGFBR2 TGFBR2 alyref alyref LOC100693948 LOC100693948 magoh magoh LOC100700156 LOC100700156 SRSF3 SRSF3 ndc1 ndc1 xpo5 xpo5 nup107 nup107 I3KN37_ORENI I3KN37_ORENI LOC100696737 LOC100696737 mcm3ap mcm3ap LOC100707688 LOC100707688 LOC100694797 LOC100694797 sarnp sarnp nup35 nup35 LOC106098551 LOC106098551 NUP214 NUP214 nup155 nup155 LOC100712573 LOC100712573 rftn2 rftn2 snupn snupn ythdc1 ythdc1 hnrnpa1 hnrnpa1 nutf2 nutf2 fyttd1 fyttd1 chtop chtop TOMM20 TOMM20 tpr tpr casc3 casc3 thoc6 thoc6 igf2bp2 igf2bp2 pcid2 pcid2 nup62 nup62 hnrnpa3 hnrnpa3 I3JNS6_ORENI I3JNS6_ORENI nup50 nup50 xpot xpot ncbp3 ncbp3 nup188 nup188 LOC102081940 LOC102081940 upf3a upf3a nup43 nup43 I3JBV9_ORENI I3JBV9_ORENI mrpl18 mrpl18 LOC102082014 LOC102082014 I3J8X5_ORENI I3J8X5_ORENI LOC100709252 LOC100709252 alkbh5 alkbh5 nup153 nup153 srsf7 srsf7 PNPT1 PNPT1 ENSONIP00000000885 ENSONIP00000000885 dhx9 dhx9 I3ITT5_ORENI I3ITT5_ORENI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
thoc3THO complex 3. (327 aa)
Sec13SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (326 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
ENSONIP00000075314annotation not available (120 aa)
LOC100701675Uncharacterized protein LOC100701675. (525 aa)
nup58Nucleoporin 58. (599 aa)
fmr1Fragile X mental retardation 1. (600 aa)
LOC100702413Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
ENSONIP00000068295Heterogeneous nuclear ribonucleoprotein A0. (302 aa)
DDX39ADExD-box helicase 39A. (443 aa)
LOC100703030Translocase of outer mitochondrial membrane 20b. (146 aa)
nup133Nucleoporin 133. (1135 aa)
slbpSLBP_RNA_bind domain-containing protein. (278 aa)
LOC100700271Eukaryotic translation initiation factor 5A. (153 aa)
nup160Nucleoporin 160. (1399 aa)
gle1GLE1 RNA export mediator. (717 aa)
LOC100703095Exportin 1 (CRM1 homolog, yeast) b. (1083 aa)
I3JJF1_ORENIQKI, KH domain containing, RNA binding b. (325 aa)
rae1Ribonucleic acid export 1. (398 aa)
nxt2Nuclear transport factor 2-like export factor 2. (143 aa)
thoc7THO complex 7. (215 aa)
NCBP1Nuclear cap binding protein subunit 1. (816 aa)
nup93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
thoc5THO complex 5. (690 aa)
LOC100704968Uncharacterized protein. (440 aa)
NUP54Nucleoporin 54. (621 aa)
LOC100704495TSC complex subunit 1b. (1275 aa)
cetn3Centrin 3. (181 aa)
Thoc2THO complex 2. (1503 aa)
LOC100694417Transcription and mRNA export factor ENY2-2. (96 aa)
I3JG28_ORENIInsulin-like growth factor 2 mRNA binding protein 1. (568 aa)
nup37Nucleoporin 37. (325 aa)
LOC100692890RAN binding protein 2. (3035 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (509 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (423 aa)
nup42Nucleoporin 42. (439 aa)
qkiQKI, KH domain containing, RNA binding 2. (349 aa)
lrmpLymphoid restricted membrane protein. (1529 aa)
ENSONIP00000046810Nuclear cap-binding protein subunit 2-like. (91 aa)
seh1lSEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (415 aa)
kpnb1Karyopherin (importin) beta 1. (899 aa)
igf2bp3Insulin-like growth factor 2 mRNA binding protein 3. (613 aa)
ENSONIP00000045384LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A0. (302 aa)
rftn1Raftlin. (682 aa)
sidt2SID1 transmembrane family, member 2. (896 aa)
Sem126S proteasome complex subunit SEM1. (60 aa)
eny2Enhancer of yellow 2 transcription factor. (95 aa)
nol6Nucleolar protein 6. (1182 aa)
ybx1Y box binding protein 1. (305 aa)
EIF5AL1Eukaryotic translation initiation factor 5A. (155 aa)
Zc3h11aZinc finger CCCH-type containing 11A. (242 aa)
nup85Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (652 aa)
thoc1THO complex 1. (650 aa)
nxf1Zgc:153681. (659 aa)
ENSONIP00000031680Nuclear cap-binding protein subunit 2-like. (120 aa)
ranGTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (260 aa)
I3IYS3_ORENINucleophosmin 1b. (215 aa)
ENSONIP00000028854annotation not available (347 aa)
ssbSmall RNA binding exonuclease protection factor La. (380 aa)
ENSONIP00000028580annotation not available (83 aa)
LOC100711348DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B. (455 aa)
nup88Nucleoporin 88. (719 aa)
phaxPhosphorylated adaptor for RNA export. (409 aa)
TGFBR2TGF-beta receptor type-2; Transmembrane serine/threonine kinase forming with the TGF- beta type I serine/threonine kinase receptor, TGFBR1, the non- promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. Transduces the TGFB1, TGFB2 and TGFB3 signal from the cell surface to the cytoplasm and is thus regulating a plethora of physiological and pathological processes including cell cycle arrest in epithelial and hematopoietic cells, control of mesenchymal cell proliferation and differentiation, wound healing, extracellular matrix production, immunosuppression and carcinoge [...] (538 aa)
alyrefAly/REF export factor. (278 aa)
LOC100693948DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (483 aa)
magohMago homolog, exon junction complex subunit. (147 aa)
LOC100700156Eukaryotic translation initiation factor 5A. (157 aa)
SRSF3Serine and arginine rich splicing factor 3b. (125 aa)
ndc1NDC1 transmembrane nucleoporin. (666 aa)
xpo5Exportin 5. (1221 aa)
nup107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (920 aa)
I3KN37_ORENIStem-loop binding protein 2. (311 aa)
LOC100696737POM121 transmembrane nucleoporin. (1177 aa)
mcm3apMinichromosome maintenance complex component 3 associated protein. (2275 aa)
LOC100707688Zgc:193690. (485 aa)
LOC100694797Translocated promoter region a, nuclear basket protein. (2505 aa)
sarnpSAP domain containing ribonucleoprotein. (210 aa)
nup35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (294 aa)
LOC106098551Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (614 aa)
NUP214Nucleoporin 214. (1690 aa)
nup155Nucleoporin 155. (1365 aa)
LOC100712573Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (637 aa)
rftn2Raftlin family member 2. (432 aa)
snupnSnurportin-1; Functions as an U snRNP-specific nuclear import adapter. Involved in the trimethylguanosine (m3G)-cap-dependent nuclear import of U snRNPs. Binds specifically to the terminal m3G-cap U snRNAs. Belongs to the snurportin family. (373 aa)
ythdc1YTH domain containing 1. (681 aa)
hnrnpa1Heterogeneous nuclear ribonucleoprotein A1b. (332 aa)
nutf2Nuclear transport factor 2. (127 aa)
fyttd1Uncharacterized protein. (319 aa)
chtopChromatin target of PRMT1a. (235 aa)
TOMM20Translocase of outer mitochondrial membrane 20. (146 aa)
tprTranslocated promoter region b, nuclear basket protein. (2364 aa)
casc3Casc3 exon junction complex subunit. (817 aa)
thoc6THO complex 6. (394 aa)
igf2bp2Insulin-like growth factor 2 mRNA binding protein 2a. (611 aa)
pcid2PCI domain containing 2. (399 aa)
nup62Nsp1_C domain-containing protein. (559 aa)
hnrnpa3Heterogeneous nuclear ribonucleoprotein A3. (403 aa)
I3JNS6_ORENIPolymerase (DNA-directed), delta interacting protein 3. (422 aa)
nup50Nucleoporin 50. (468 aa)
xpotExportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (971 aa)
ncbp3Nuclear cap binding subunit 3. (686 aa)
nup188Nucleoporin 188. (1746 aa)
LOC102081940Si:ch211-216l23.2. (424 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (463 aa)
nup43Nucleoporin 43. (372 aa)
I3JBV9_ORENIQKI, KH domain containing, RNA binding a. (382 aa)
mrpl18Mitochondrial ribosomal protein L18. (189 aa)
LOC102082014Raftlin, lipid raft linker 1a. (697 aa)
I3J8X5_ORENIRRM domain-containing protein. (126 aa)
LOC100709252RRM domain-containing protein. (258 aa)
alkbh5AlkB homolog 5, RNA demethylase. (357 aa)
nup153Nucleoporin 153. (1529 aa)
srsf7Uncharacterized protein. (254 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1. (767 aa)
ENSONIP00000000885TSC complex subunit 1a. (924 aa)
dhx9DEAH (Asp-Glu-Ala-His) box helicase 9. (1288 aa)
I3ITT5_ORENIExportin 1 (CRM1 homolog, yeast) a. (1075 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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