91 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (509 aa)
	ENSONIP00000031680	Nuclear cap-binding protein subunit 2-like. (120 aa)
	ENSONIP00000028854	annotation not available (347 aa)
	ENSONIP00000028580	annotation not available (83 aa)
	LOC100711348	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B. (455 aa)
	nup88	Nucleoporin 88. (719 aa)
	alyref	Aly/REF export factor. (278 aa)
	LOC100693948	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (483 aa)
	magoh	Mago homolog, exon junction complex subunit. (147 aa)
	LOC100700156	Eukaryotic translation initiation factor 5A. (157 aa)
	SRSF3	Serine and arginine rich splicing factor 3b. (125 aa)
	ndc1	NDC1 transmembrane nucleoporin. (666 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (920 aa)
	I3KN37_ORENI	Stem-loop binding protein 2. (311 aa)
	LOC100696737	POM121 transmembrane nucleoporin. (1177 aa)
	mcm3ap	Minichromosome maintenance complex component 3 associated protein. (2275 aa)
	LOC100707688	Zgc:193690. (485 aa)
	LOC100694797	Translocated promoter region a, nuclear basket protein. (2505 aa)
	sarnp	SAP domain containing ribonucleoprotein. (210 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (294 aa)
	NUP214	Nucleoporin 214. (1690 aa)
	nup155	Nucleoporin 155. (1365 aa)
	ythdc1	YTH domain containing 1. (681 aa)
	hnrnpa1	Heterogeneous nuclear ribonucleoprotein A1b. (332 aa)
	nutf2	Nuclear transport factor 2. (127 aa)
	fyttd1	Uncharacterized protein. (319 aa)
	chtop	Chromatin target of PRMT1a. (235 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2364 aa)
	casc3	Casc3 exon junction complex subunit. (817 aa)
	thoc6	THO complex 6. (394 aa)
	igf2bp2	Insulin-like growth factor 2 mRNA binding protein 2a. (611 aa)
	pcid2	PCI domain containing 2. (399 aa)
	hnrnpa3	Heterogeneous nuclear ribonucleoprotein A3. (403 aa)
	I3JNS6_ORENI	Polymerase (DNA-directed), delta interacting protein 3. (422 aa)
	nxf1	Zgc:153681. (659 aa)
	nup50	Nucleoporin 50. (468 aa)
	ncbp3	Nuclear cap binding subunit 3. (686 aa)
	upf3a	UPF3A regulator of nonsense mediated mRNA decay. (463 aa)
	nup43	Nucleoporin 43. (372 aa)
	I3JBV9_ORENI	QKI, KH domain containing, RNA binding a. (382 aa)
	I3J8X5_ORENI	RRM domain-containing protein. (126 aa)
	LOC100709252	RRM domain-containing protein. (258 aa)
	alkbh5	AlkB homolog 5, RNA demethylase. (357 aa)
	srsf7	Uncharacterized protein. (254 aa)
	dhx9	DEAH (Asp-Glu-Ala-His) box helicase 9. (1288 aa)
	I3ITT5_ORENI	Exportin 1 (CRM1 homolog, yeast) a. (1075 aa)
	thoc1	THO complex 1. (650 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (652 aa)
	Zc3h11a	Zinc finger CCCH-type containing 11A. (242 aa)
	EIF5AL1	Eukaryotic translation initiation factor 5A. (155 aa)
	eny2	Enhancer of yellow 2 transcription factor. (95 aa)
	Sem1	26S proteasome complex subunit SEM1. (60 aa)
	ENSONIP00000045384	LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A0. (302 aa)
	igf2bp3	Insulin-like growth factor 2 mRNA binding protein 3. (613 aa)
	seh1l	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (415 aa)
	ENSONIP00000046810	Nuclear cap-binding protein subunit 2-like. (91 aa)
	lrmp	Lymphoid restricted membrane protein. (1529 aa)
	qki	QKI, KH domain containing, RNA binding 2. (349 aa)
	nup42	Nucleoporin 42. (439 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (423 aa)
	LOC100692890	RAN binding protein 2. (3035 aa)
	nup37	Nucleoporin 37. (325 aa)
	I3JG28_ORENI	Insulin-like growth factor 2 mRNA binding protein 1. (568 aa)
	LOC100694417	Transcription and mRNA export factor ENY2-2. (96 aa)
	Thoc2	THO complex 2. (1503 aa)
	cetn3	Centrin 3. (181 aa)
	NUP54	Nucleoporin 54. (621 aa)
	LOC100704968	Uncharacterized protein. (440 aa)
	thoc5	THO complex 5. (690 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (816 aa)
	thoc7	THO complex 7. (215 aa)
	nxt2	Nuclear transport factor 2-like export factor 2. (143 aa)
	rae1	Ribonucleic acid export 1. (398 aa)
	I3JJF1_ORENI	QKI, KH domain containing, RNA binding b. (325 aa)
	LOC100703095	Exportin 1 (CRM1 homolog, yeast) b. (1083 aa)
	gle1	GLE1 RNA export mediator. (717 aa)
	nup160	Nucleoporin 160. (1399 aa)
	LOC100700271	Eukaryotic translation initiation factor 5A. (153 aa)
	slbp	SLBP_RNA_bind domain-containing protein. (278 aa)
	nup133	Nucleoporin 133. (1135 aa)
	DDX39A	DExD-box helicase 39A. (443 aa)
	ENSONIP00000068295	Heterogeneous nuclear ribonucleoprotein A0. (302 aa)
	LOC100702413	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
	thoc3	THO complex 3. (327 aa)
	fmr1	Fragile X mental retardation 1. (600 aa)
	nup58	Nucleoporin 58. (599 aa)
	LOC100701675	Uncharacterized protein LOC100701675. (525 aa)
	ENSONIP00000075314	annotation not available (120 aa)
	rbm8a	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
	Sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (326 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX39A	ENSONIP00000031680	ENSONIP00000068117	ENSONIP00000031680	DExD-box helicase 39A.	Nuclear cap-binding protein subunit 2-like.	0.621
DDX39A	ENSONIP00000046810	ENSONIP00000068117	ENSONIP00000046810	DExD-box helicase 39A.	Nuclear cap-binding protein subunit 2-like.	0.621
DDX39A	ENSONIP00000075314	ENSONIP00000068117	ENSONIP00000075314	DExD-box helicase 39A.	annotation not available	0.621
DDX39A	I3J8X5_ORENI	ENSONIP00000068117	ENSONIP00000005315	DExD-box helicase 39A.	RRM domain-containing protein.	0.659
DDX39A	I3JNS6_ORENI	ENSONIP00000068117	ENSONIP00000010520	DExD-box helicase 39A.	Polymerase (DNA-directed), delta interacting protein 3.	0.859
DDX39A	LOC100692890	ENSONIP00000068117	ENSONIP00000049343	DExD-box helicase 39A.	RAN binding protein 2.	0.626
DDX39A	LOC100694417	ENSONIP00000068117	ENSONIP00000052019	DExD-box helicase 39A.	Transcription and mRNA export factor ENY2-2.	0.470
DDX39A	LOC100702413	ENSONIP00000068117	ENSONIP00000071076	DExD-box helicase 39A.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.621
DDX39A	LOC100709252	ENSONIP00000068117	ENSONIP00000004137	DExD-box helicase 39A.	RRM domain-containing protein.	0.921
DDX39A	NCBP1	ENSONIP00000068117	ENSONIP00000058989	DExD-box helicase 39A.	Nuclear cap binding protein subunit 1.	0.789
DDX39A	NUP214	ENSONIP00000068117	ENSONIP00000018851	DExD-box helicase 39A.	Nucleoporin 214.	0.557
DDX39A	NUP54	ENSONIP00000068117	ENSONIP00000054374	DExD-box helicase 39A.	Nucleoporin 54.	0.404
DDX39A	SRSF3	ENSONIP00000068117	ENSONIP00000023849	DExD-box helicase 39A.	Serine and arginine rich splicing factor 3b.	0.659
DDX39A	Sec13	ENSONIP00000068117	ENSONIP00000081501	DExD-box helicase 39A.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.415
DDX39A	Thoc2	ENSONIP00000068117	ENSONIP00000052051	DExD-box helicase 39A.	THO complex 2.	0.959
DDX39A	Zc3h11a	ENSONIP00000068117	ENSONIP00000036820	DExD-box helicase 39A.	Zinc finger CCCH-type containing 11A.	0.603
DDX39A	alyref	ENSONIP00000068117	ENSONIP00000024463	DExD-box helicase 39A.	Aly/REF export factor.	0.945
DDX39A	casc3	ENSONIP00000068117	ENSONIP00000011736	DExD-box helicase 39A.	Casc3 exon junction complex subunit.	0.682
DDX39A	chtop	ENSONIP00000068117	ENSONIP00000013028	DExD-box helicase 39A.	Chromatin target of PRMT1a.	0.822
DDX39A	dhx9	ENSONIP00000068117	ENSONIP00000000368	DExD-box helicase 39A.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.674