(18 nodes) NF-kappaB binding network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100698988	E1A binding protein p300 a. (2777 aa)
	I3K790_ORENI	BRMS1 transcriptional repressor and anoikis regulator. (320 aa)
	LOC100700725	E1A binding protein p300 b. (2799 aa)
	psma6	Proteasome 20S subunit alpha 6. (254 aa)
	LOC100691708	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (305 aa)
	LOC100710571	Metadherin a. (401 aa)
	nfkbid	ANK_REP_REGION domain-containing protein. (503 aa)
	bcl10	BCL10 immune signaling adaptor. (247 aa)
	commd7	COMM domain containing 7. (199 aa)
	LOC100694567	Uncharacterized protein. (533 aa)
	LOC100701743	Proteasome subunit alpha type. (246 aa)
	cdk5rap3	CDK5 regulatory subunit associated protein 3. (506 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (318 aa)
	LOC100691978	Proteasome subunit alpha type. (256 aa)
	pdcd11	Programmed cell death 11. (1719 aa)
	faf1	Fas (TNFRSF6) associated factor 1. (674 aa)
	rnf25	Ring finger protein 25. (486 aa)
	ENSONIP00000070386	annotation not available (154 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000070386	LOC100710571	ENSONIP00000070386	ENSONIP00000003337	annotation not available	Metadherin a.	0.884
LOC100691708	bcl10	ENSONIP00000001490	ENSONIP00000011727	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	BCL10 immune signaling adaptor.	0.557
LOC100691708	nfkbia	ENSONIP00000001490	ENSONIP00000024546	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.903
LOC100710571	ENSONIP00000070386	ENSONIP00000003337	ENSONIP00000070386	Metadherin a.	annotation not available	0.884
bcl10	LOC100691708	ENSONIP00000011727	ENSONIP00000001490	BCL10 immune signaling adaptor.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.557
bcl10	nfkbia	ENSONIP00000011727	ENSONIP00000024546	BCL10 immune signaling adaptor.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.557
nfkbia	LOC100691708	ENSONIP00000024546	ENSONIP00000001490	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.903
nfkbia	bcl10	ENSONIP00000024546	ENSONIP00000011727	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	BCL10 immune signaling adaptor.	0.557