STRINGSTRING
adar adar LOC100690637 LOC100690637 mib1 mib1 cbfb cbfb LOC109194259 LOC109194259 iqcg iqcg gar1 gar1 kri1 kri1 SP3 SP3 LOC100700016 LOC100700016 cdk5rap3 cdk5rap3 ENSONIP00000061996 ENSONIP00000061996 sumo2 sumo2 ENSONIP00000064374 ENSONIP00000064374 ube2i ube2i ENSONIP00000066554 ENSONIP00000066554 LOC100709166 LOC100709166 sae1 sae1 sumo1 sumo1 ENSONIP00000035341 ENSONIP00000035341
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
adarAdenosine deaminase RNA specific. (1363 aa)
LOC100690637Small ubiquitin-related modifier. (94 aa)
mib1Mindbomb E3 ubiquitin protein ligase 1. (1040 aa)
cbfbCore-binding factor subunit beta. (188 aa)
LOC109194259T-cell acute lymphocytic leukemia 1. (447 aa)
iqcgUncharacterized protein. (305 aa)
gar1H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (242 aa)
kri1KRI1 homolog. (767 aa)
SP3Sp3a transcription factor. (671 aa)
LOC100700016BHLH domain-containing protein. (468 aa)
cdk5rap3CDK5 regulatory subunit associated protein 3. (506 aa)
ENSONIP00000061996annotation not available (157 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
ENSONIP00000064374Small ubiquitin-related modifier 2. (90 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
ENSONIP00000066554annotation not available (142 aa)
LOC100709166Small ubiquitin-related modifier. (94 aa)
sae1SUMO1 activating enzyme subunit 1. (381 aa)
sumo1Small ubiquitin-related modifier. (101 aa)
ENSONIP00000035341T-cell acute lymphocytic leukemia protein 1 homolog. (100 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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