7 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	alkbh4	AlkB homolog 4, lysine demthylase. (275 aa)
	LOC100693066	Protein regulator of cytokinesis 1a. (617 aa)
	LOC100704759	Actin-binding protein anillin. (1275 aa)
	LOC100699984	Peptidase S72 domain-containing protein. (909 aa)
	dag1	Dystroglycan 1. (903 aa)
	anln	Anillin, actin binding protein. (1118 aa)
	prc1	Protein regulator of cytokinesis 1b. (610 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100693066	LOC100704759	ENSONIP00000078644	ENSONIP00000013689	Protein regulator of cytokinesis 1a.	Actin-binding protein anillin.	0.586
LOC100693066	anln	ENSONIP00000078644	ENSONIP00000013040	Protein regulator of cytokinesis 1a.	Anillin, actin binding protein.	0.586
LOC100699984	dag1	ENSONIP00000021921	ENSONIP00000023354	Peptidase S72 domain-containing protein.	Dystroglycan 1.	0.902
LOC100704759	LOC100693066	ENSONIP00000013689	ENSONIP00000078644	Actin-binding protein anillin.	Protein regulator of cytokinesis 1a.	0.586
LOC100704759	prc1	ENSONIP00000013689	ENSONIP00000059246	Actin-binding protein anillin.	Protein regulator of cytokinesis 1b.	0.586
anln	LOC100693066	ENSONIP00000013040	ENSONIP00000078644	Anillin, actin binding protein.	Protein regulator of cytokinesis 1a.	0.586
anln	prc1	ENSONIP00000013040	ENSONIP00000059246	Anillin, actin binding protein.	Protein regulator of cytokinesis 1b.	0.586
dag1	LOC100699984	ENSONIP00000023354	ENSONIP00000021921	Dystroglycan 1.	Peptidase S72 domain-containing protein.	0.902
prc1	LOC100704759	ENSONIP00000059246	ENSONIP00000013689	Protein regulator of cytokinesis 1b.	Actin-binding protein anillin.	0.586
prc1	anln	ENSONIP00000059246	ENSONIP00000013040	Protein regulator of cytokinesis 1b.	Anillin, actin binding protein.	0.586