(15 nodes) Regulation of protein deubiquitination network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100693847	Deoxyribonuclease 1 like 4, tandem duplicate 1. (345 aa)
	wdr20	WD repeat domain 20a. (614 aa)
	ubxn1	UBX domain protein 1. (311 aa)
	LOC100697163	E3 ubiquitin-protein ligase. (888 aa)
	LOC100703809	Si:dkey-206d17.12. (643 aa)
	Sart3	Spliceosome associated factor 3, U4/U6 recycling protein. (997 aa)
	LOC100702646	Zinc finger CCCH-type containing 12A. (632 aa)
	nop53	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (465 aa)
	tnip1	TNFAIP3 interacting protein 1. (683 aa)
	LOC100704346	TRAF family member-associated NF-kappa-B activator isoform X2. (355 aa)
	LOC109194541	Deoxyribonuclease-1-like protein. (366 aa)
	LOC100702516	WD repeat domain 20b. (632 aa)
	LOC100694718	E3 ubiquitin-protein ligase. (877 aa)
	ENSONIP00000062498	LOW QUALITY PROTEIN: WD repeat-containing protein 20. (180 aa)
	LOC109194281	Deoxyribonuclease; Belongs to the DNase I family. (352 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100694718	LOC100697163	ENSONIP00000056551	ENSONIP00000011573	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.901
LOC100697163	LOC100694718	ENSONIP00000011573	ENSONIP00000056551	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.901
LOC100702646	LOC100704346	ENSONIP00000020441	ENSONIP00000029650	Zinc finger CCCH-type containing 12A.	TRAF family member-associated NF-kappa-B activator isoform X2.	0.575
LOC100703809	LOC100704346	ENSONIP00000017222	ENSONIP00000029650	Si:dkey-206d17.12.	TRAF family member-associated NF-kappa-B activator isoform X2.	0.569
LOC100704346	LOC100702646	ENSONIP00000029650	ENSONIP00000020441	TRAF family member-associated NF-kappa-B activator isoform X2.	Zinc finger CCCH-type containing 12A.	0.575
LOC100704346	LOC100703809	ENSONIP00000029650	ENSONIP00000017222	TRAF family member-associated NF-kappa-B activator isoform X2.	Si:dkey-206d17.12.	0.569