(74 nodes) Large ribosomal subunit network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrpl13	39S ribosomal protein L13, mitochondrial. (181 aa)
	LOC100691767	Mitochondrial transcription termination factor 4. (338 aa)
	ENSONIP00000079022	60S ribosomal protein L27a-like isoform X3. (30 aa)
	mrpl46	Mitochondrial ribosomal protein L46. (298 aa)
	mrpl16	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (258 aa)
	mrpl11	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (195 aa)
	LOC100697226	Mitochondrial ribosomal protein L23. (154 aa)
	rpl35	Ribosomal protein L35. (138 aa)
	rpl32	Ribosomal protein L32. (150 aa)
	mrpl12	39S ribosomal protein L12, mitochondrial. (195 aa)
	Mrpl54	Mitochondrial ribosomal protein L54. (148 aa)
	mrpl42	Mitochondrial ribosomal protein L42. (100 aa)
	mrpl34	Mitochondrial ribosomal protein L34. (123 aa)
	mrpl37	Mitochondrial ribosomal protein L37. (432 aa)
	mrpl53	Mitochondrial ribosomal protein L53. (131 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (246 aa)
	mrps30	Mitochondrial ribosomal protein S30. (420 aa)
	Rpl35a	Large subunit ribosomal protein L35Ae. (110 aa)
	rpl31	Ribosomal protein L31. (213 aa)
	Mrpl33	39S ribosomal protein L33, mitochondrial isoform X1. (82 aa)
	mrpl55	Zgc:171480. (132 aa)
	mrpl10	Mitochondrial ribosomal protein L10. (252 aa)
	rpl4	Ribosomal protein L4. (383 aa)
	mrpl14	Mitochondrial ribosomal protein L14. (148 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (212 aa)
	ENSONIP00000042175	annotation not available (95 aa)
	ENSONIP00000040312	annotation not available (101 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	ENSONIP00000037992	annotation not available (130 aa)
	ENSONIP00000036625	annotation not available (103 aa)
	mrpl27	Mitochondrial ribosomal protein L27. (153 aa)
	rpl10	Ribosomal protein L10. (285 aa)
	mrpl43	39S ribosomal protein L43, mitochondrial. (151 aa)
	mrpl30	Mitochondrial ribosomal protein L30. (160 aa)
	mrpl4	Mitochondrial ribosomal protein L4. (302 aa)
	ENSONIP00000029827	annotation not available (173 aa)
	I3J2M6_ORENI	Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family. (151 aa)
	mrpl32	Mitochondrial ribosomal protein L32. (176 aa)
	ENSONIP00000026981	annotation not available (150 aa)
	mrpl51	Mitochondrial ribosomal protein L51. (131 aa)
	MRPL49	Mitochondrial ribosomal protein L49. (140 aa)
	mrpl41	Mitochondrial ribosomal protein L41. (164 aa)
	I3KY89_ORENI	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (156 aa)
	MRPL21	Mitochondrial ribosomal protein L21. (195 aa)
	mrpl35	Mitochondrial ribosomal protein L35. (176 aa)
	ccdc32	Coiled-coil domain containing 32. (192 aa)
	mrpl24	Mitochondrial ribosomal protein L24. (216 aa)
	mrpl38	Mitochondrial ribosomal protein L38. (386 aa)
	MRPL58	Mitochondrial ribosomal protein L58. (193 aa)
	mrpl20	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (149 aa)
	mrpl52	Mitochondrial ribosomal protein L52. (129 aa)
	LOC100708525	Ribosomal protein L26. (145 aa)
	mrpl22	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family. (208 aa)
	RPL19-2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	mrpl19	Mitochondrial ribosomal protein L19. (285 aa)
	mrpl40	Mitochondrial ribosomal protein L40. (203 aa)
	rpl6	Ribosomal protein L6. (325 aa)
	mpv17l2	MPV17 mitochondrial membrane protein-like 2; Belongs to the peroxisomal membrane protein PXMP2/4 family. (218 aa)
	mrpl39	Mitochondrial ribosomal protein L39. (335 aa)
	mrpl17	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (165 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	mrpl2	Mitochondrial ribosomal protein L2. (298 aa)
	rpl9	Ribosomal protein L9. (192 aa)
	rpl18	60S ribosomal protein L18; Component of the large ribosomal subunit. (188 aa)
	mrpl15	Mitochondrial ribosomal protein L15. (296 aa)
	mrpl28	Mitochondrial ribosomal protein L28. (252 aa)
	mrpl18	Mitochondrial ribosomal protein L18. (189 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	mrpl3	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (341 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (194 aa)
	mrpl45	Mitochondrial ribosomal protein L45. (315 aa)
	mrpl47	Mitochondrial ribosomal protein L47. (259 aa)
	LOC100701605	Mitochondrial ribosomal protein L48. (212 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000026981	ENSONIP00000029827	ENSONIP00000026981	ENSONIP00000029827	annotation not available	annotation not available	0.478
ENSONIP00000026981	ENSONIP00000036625	ENSONIP00000026981	ENSONIP00000036625	annotation not available	annotation not available	0.763
ENSONIP00000026981	ENSONIP00000037992	ENSONIP00000026981	ENSONIP00000037992	annotation not available	annotation not available	0.756
ENSONIP00000026981	ENSONIP00000040312	ENSONIP00000026981	ENSONIP00000040312	annotation not available	annotation not available	0.763
ENSONIP00000026981	ENSONIP00000042175	ENSONIP00000026981	ENSONIP00000042175	annotation not available	annotation not available	0.756
ENSONIP00000026981	ENSONIP00000079022	ENSONIP00000026981	ENSONIP00000079022	annotation not available	60S ribosomal protein L27a-like isoform X3.	0.522
ENSONIP00000026981	I3KY89_ORENI	ENSONIP00000026981	ENSONIP00000026086	annotation not available	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.878
ENSONIP00000026981	LOC100691767	ENSONIP00000026981	ENSONIP00000077421	annotation not available	Mitochondrial transcription termination factor 4.	0.540
ENSONIP00000026981	LOC100697226	ENSONIP00000026981	ENSONIP00000063217	annotation not available	Mitochondrial ribosomal protein L23.	0.886
ENSONIP00000026981	LOC100701605	ENSONIP00000026981	ENSONIP00000075921	annotation not available	Mitochondrial ribosomal protein L48.	0.763
ENSONIP00000026981	LOC100708525	ENSONIP00000026981	ENSONIP00000022288	annotation not available	Ribosomal protein L26.	0.541
ENSONIP00000026981	MRPL21	ENSONIP00000026981	ENSONIP00000026004	annotation not available	Mitochondrial ribosomal protein L21.	0.883
ENSONIP00000026981	MRPL49	ENSONIP00000026981	ENSONIP00000026721	annotation not available	Mitochondrial ribosomal protein L49.	0.756
ENSONIP00000026981	MRPL58	ENSONIP00000026981	ENSONIP00000024672	annotation not available	Mitochondrial ribosomal protein L58.	0.851
ENSONIP00000026981	Mrpl33	ENSONIP00000026981	ENSONIP00000051957	annotation not available	39S ribosomal protein L33, mitochondrial isoform X1.	0.893
ENSONIP00000026981	Mrpl54	ENSONIP00000026981	ENSONIP00000067390	annotation not available	Mitochondrial ribosomal protein L54.	0.884
ENSONIP00000026981	mrpl10	ENSONIP00000026981	ENSONIP00000050140	annotation not available	Mitochondrial ribosomal protein L10.	0.844
ENSONIP00000026981	mrpl11	ENSONIP00000026981	ENSONIP00000061694	annotation not available	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.867
ENSONIP00000026981	mrpl12	ENSONIP00000026981	ENSONIP00000064780	annotation not available	39S ribosomal protein L12, mitochondrial.	0.886
ENSONIP00000026981	mrpl13	ENSONIP00000026981	ENSONIP00000076576	annotation not available	39S ribosomal protein L13, mitochondrial.	0.919