(57 nodes) Synaptic vesicle membrane network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100693903	Solute carrier family 17 member 7a. (591 aa)
	LOC100711869	Uncharacterized protein. (396 aa)
	I3KJ10_ORENI	Dynamin 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (697 aa)
	LOC100700952	Synaptophysin a. (326 aa)
	rab3c	RAB3C, member RAS oncogene family. (224 aa)
	syn2	Uncharacterized protein. (812 aa)
	LOC100706223	Zgc:92912. (101 aa)
	LOC100694195	RAB3A, member RAS oncogene family. (221 aa)
	LOC100707465	MFS domain-containing protein. (669 aa)
	ENSONIP00000077119	annotation not available (232 aa)
	syp	Synaptophysin b. (293 aa)
	I3IV58_ORENI	Syntaxin 10. (246 aa)
	SYNPR	Synaptoporin. (291 aa)
	ENSONIP00000073079	Proline-rich transmembrane protein 1. (70 aa)
	LOC100697206	Synaptic vesicle glycoprotein 2Ba. (714 aa)
	renbp	Renin binding protein. (448 aa)
	LOC100706516	Synaptophysin-like 2a. (244 aa)
	gabra2	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (502 aa)
	PRRT1	Proline-rich transmembrane protein 1. (92 aa)
	cacfd1	Calcium channel flower domain containing 1. (168 aa)
	SLC17A6	Solute carrier family 17 member 6b. (609 aa)
	LOC106096419	Solute carrier family 17 member 8. (585 aa)
	LOC100701373	Uncharacterized protein. (221 aa)
	ENSONIP00000050976	Vesicle-associated membrane protein 2. (127 aa)
	LOC100693191	Solute carrier family 32 member 1. (526 aa)
	LOC100706230	Vesicle-associated membrane protein 1. (119 aa)
	LOC100692232	MFS domain-containing protein. (588 aa)
	LOC100691355	Aa_trans domain-containing protein. (522 aa)
	rab3a	RAB3A, member RAS oncogene family, b. (219 aa)
	slc17a6	Solute carrier family 17 member 6. (601 aa)
	tmem163	Transmembrane protein 163. (317 aa)
	LOC100694171	RAB3B, member RAS oncogene family. (217 aa)
	I3JX37_ORENI	Rabphilin 3A homolog (mouse), b. (618 aa)
	LOC100703802	Synaptophysin-like 2b. (236 aa)
	SV2A	Synaptic vesicle glycoprotein 2A. (737 aa)
	LOC100705504	Synaptoporin. (303 aa)
	TMEM163	Transmembrane protein 163a. (289 aa)
	ENSONIP00000029945	Syntaxin-12-like. (111 aa)
	LOC100700270	BH4_2 domain-containing protein. (197 aa)
	I3KJH1_ORENI	Synaptophysin-like 1. (246 aa)
	LOC100706253	Synaptic vesicle glycoprotein 2Ca. (733 aa)
	LOC100694717	Synaptic vesicle glycoprotein 2C. (736 aa)
	LOC100712226	Uncharacterized protein. (587 aa)
	LOC100690058	Double C2-like domains, delta. (426 aa)
	I3K4V1_ORENI	Synaptic vesicle glycoprotein 2. (565 aa)
	I3JZZ7_ORENI	Double C2-like domains, alpha. (423 aa)
	SYN3	Synapsin III. (541 aa)
	LOC100694944	Synapsin I. (649 aa)
	I3JSD3_ORENI	Uncharacterized protein. (420 aa)
	DNM1L	Dynamin 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (721 aa)
	LOC100702979	Synaptic vesicle glycoprotein 2A. (737 aa)
	LOC100703329	RAB3D, member RAS oncogene family, b. (225 aa)
	I3JEN9_ORENI	Aa_trans domain-containing protein. (403 aa)
	Stx12	Syntaxin 12. (269 aa)
	I3JA42_ORENI	Syntaxin 6; Belongs to the syntaxin family. (236 aa)
	bcl2l1	BCL2 like 1. (232 aa)
	I3KKK6_ORENI	Synapsin IIa. (494 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNM1L	ENSONIP00000050976	ENSONIP00000010900	ENSONIP00000050976	Dynamin 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Vesicle-associated membrane protein 2.	0.455
DNM1L	I3KJ10_ORENI	ENSONIP00000010900	ENSONIP00000042686	Dynamin 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Dynamin 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.900
DNM1L	LOC100706223	ENSONIP00000010900	ENSONIP00000081073	Dynamin 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Zgc:92912.	0.455
DNM1L	LOC100706230	ENSONIP00000010900	ENSONIP00000047368	Dynamin 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Vesicle-associated membrane protein 1.	0.455
ENSONIP00000029945	ENSONIP00000050976	ENSONIP00000029945	ENSONIP00000050976	Syntaxin-12-like.	Vesicle-associated membrane protein 2.	0.517
ENSONIP00000029945	I3IV58_ORENI	ENSONIP00000029945	ENSONIP00000075569	Syntaxin-12-like.	Syntaxin 10.	0.734
ENSONIP00000029945	I3JA42_ORENI	ENSONIP00000029945	ENSONIP00000005732	Syntaxin-12-like.	Syntaxin 6; Belongs to the syntaxin family.	0.734
ENSONIP00000029945	LOC100706223	ENSONIP00000029945	ENSONIP00000081073	Syntaxin-12-like.	Zgc:92912.	0.517
ENSONIP00000029945	LOC100706230	ENSONIP00000029945	ENSONIP00000047368	Syntaxin-12-like.	Vesicle-associated membrane protein 1.	0.517
ENSONIP00000029945	Stx12	ENSONIP00000029945	ENSONIP00000005912	Syntaxin-12-like.	Syntaxin 12.	0.900
ENSONIP00000050976	DNM1L	ENSONIP00000050976	ENSONIP00000010900	Vesicle-associated membrane protein 2.	Dynamin 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.455
ENSONIP00000050976	ENSONIP00000029945	ENSONIP00000050976	ENSONIP00000029945	Vesicle-associated membrane protein 2.	Syntaxin-12-like.	0.517
ENSONIP00000050976	ENSONIP00000077119	ENSONIP00000050976	ENSONIP00000077119	Vesicle-associated membrane protein 2.	annotation not available	0.517
ENSONIP00000050976	I3IV58_ORENI	ENSONIP00000050976	ENSONIP00000075569	Vesicle-associated membrane protein 2.	Syntaxin 10.	0.780
ENSONIP00000050976	I3JA42_ORENI	ENSONIP00000050976	ENSONIP00000005732	Vesicle-associated membrane protein 2.	Syntaxin 6; Belongs to the syntaxin family.	0.780
ENSONIP00000050976	I3JEN9_ORENI	ENSONIP00000050976	ENSONIP00000007330	Vesicle-associated membrane protein 2.	Aa_trans domain-containing protein.	0.550
ENSONIP00000050976	I3KJ10_ORENI	ENSONIP00000050976	ENSONIP00000042686	Vesicle-associated membrane protein 2.	Dynamin 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.455
ENSONIP00000050976	I3KJH1_ORENI	ENSONIP00000050976	ENSONIP00000021266	Vesicle-associated membrane protein 2.	Synaptophysin-like 1.	0.509
ENSONIP00000050976	I3KKK6_ORENI	ENSONIP00000050976	ENSONIP00000045226	Vesicle-associated membrane protein 2.	Synapsin IIa.	0.532
ENSONIP00000050976	LOC100691355	ENSONIP00000050976	ENSONIP00000037081	Vesicle-associated membrane protein 2.	Aa_trans domain-containing protein.	0.550