10 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100710839	Lysosomal protein transmembrane 4 beta. (225 aa)
	LOC100699288	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2. (1626 aa)
	I3KNN9_ORENI	Uncharacterized protein. (1608 aa)
	LAPTM4B	Lysosomal protein transmembrane 4 beta. (235 aa)
	LOC100697229	ATP-binding cassette, sub-family B (MDR/TAP), member 6a. (861 aa)
	smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a. (1628 aa)
	laptm4a	Lysosomal protein transmembrane 4 alpha. (252 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (786 aa)
	Sorl1	Sortilin-related receptor, L(DLR class) A repeats containing. (2274 aa)
	I3IU57_ORENI	ATP-binding cassette, sub-family C (CFTR/MRP), member 10. (1496 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3IU57_ORENI	LOC100697229	ENSONIP00000000147	ENSONIP00000015362	ATP-binding cassette, sub-family C (CFTR/MRP), member 10.	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	0.417
LAPTM4B	LOC100710839	ENSONIP00000020704	ENSONIP00000078263	Lysosomal protein transmembrane 4 beta.	Lysosomal protein transmembrane 4 beta.	0.901
LAPTM4B	laptm4a	ENSONIP00000020704	ENSONIP00000007702	Lysosomal protein transmembrane 4 beta.	Lysosomal protein transmembrane 4 alpha.	0.903
LOC100697229	I3IU57_ORENI	ENSONIP00000015362	ENSONIP00000000147	ATP-binding cassette, sub-family B (MDR/TAP), member 6a.	ATP-binding cassette, sub-family C (CFTR/MRP), member 10.	0.417
LOC100710839	LAPTM4B	ENSONIP00000078263	ENSONIP00000020704	Lysosomal protein transmembrane 4 beta.	Lysosomal protein transmembrane 4 beta.	0.901
LOC100710839	laptm4a	ENSONIP00000078263	ENSONIP00000007702	Lysosomal protein transmembrane 4 beta.	Lysosomal protein transmembrane 4 alpha.	0.903
laptm4a	LAPTM4B	ENSONIP00000007702	ENSONIP00000020704	Lysosomal protein transmembrane 4 alpha.	Lysosomal protein transmembrane 4 beta.	0.903
laptm4a	LOC100710839	ENSONIP00000007702	ENSONIP00000078263	Lysosomal protein transmembrane 4 alpha.	Lysosomal protein transmembrane 4 beta.	0.903