50 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I3KNB3_ORENI	Sema domain-containing protein. (1865 aa)
	LOC100706333	Si:dkey-49n23.1; Belongs to the semaphorin family. (826 aa)
	plxna1	Plexin A1. (1896 aa)
	LOC100710688	Uncharacterized protein; Belongs to the semaphorin family. (892 aa)
	sema5a	Sema domain-containing protein. (1078 aa)
	LOC100710907	Plexin A2. (1901 aa)
	SEMA4D	Semaphorin 4D; Belongs to the semaphorin family. (887 aa)
	LOC100710107	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba; Belongs to the semaphorin family. (955 aa)
	sema3a	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (816 aa)
	PLXNA2	Plexin A2. (1913 aa)
	mst1r	Macrophage stimulating 1 receptor b. (1374 aa)
	LOC100703339	Sema domain-containing protein; Belongs to the semaphorin family. (703 aa)
	PLXND1	Plexin D1. (1899 aa)
	I3KFN3_ORENI	Uncharacterized protein; Belongs to the semaphorin family. (849 aa)
	sema7a	Semaphorin 7A; Belongs to the semaphorin family. (661 aa)
	LOC100703109	Sema domain-containing protein. (1092 aa)
	sema3d	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; Belongs to the semaphorin family. (812 aa)
	sema3e	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (797 aa)
	sema6a	Semaphorin 6A; Belongs to the semaphorin family. (1021 aa)
	LOC100709840	Semaphorin 4e; Belongs to the semaphorin family. (748 aa)
	LOC100705693	Si:ch211-113g11.6; Belongs to the semaphorin family. (640 aa)
	LOC100704625	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E; Belongs to the semaphorin family. (1089 aa)
	LOC100701740	Macrophage stimulating 1 receptor a. (1371 aa)
	LOC100701195	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family. (934 aa)
	LOC100706063	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D; Belongs to the semaphorin family. (1151 aa)
	LOC100711384	Plexin b1b. (2244 aa)
	LOC100697755	Si:ch211-129c21.1; Belongs to the semaphorin family. (782 aa)
	LOC102083175	Uncharacterized protein; Belongs to the semaphorin family. (775 aa)
	sema3b	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (806 aa)
	LOC100706207	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H; Belongs to the semaphorin family. (767 aa)
	LOC100703115	Plexin B3. (1874 aa)
	LOC100693140	Sema domain-containing protein; Belongs to the semaphorin family. (836 aa)
	sema3f	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (796 aa)
	sema6d	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like; Belongs to the semaphorin family. (1108 aa)
	sema6b	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb; Belongs to the semaphorin family. (870 aa)
	SEMA4F	Sema domain-containing protein; Belongs to the semaphorin family. (850 aa)
	I3JQ94_ORENI	Plexin b2b. (1853 aa)
	sema3c	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C; Belongs to the semaphorin family. (765 aa)
	LOC100690017	Uncharacterized protein. (1287 aa)
	LOC100703317	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga; Belongs to the semaphorin family. (733 aa)
	sema3g	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family. (863 aa)
	LOC100694323	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (860 aa)
	LOC100703221	Sema domain-containing protein; Belongs to the semaphorin family. (842 aa)
	met	MET proto-oncogene, receptor tyrosine kinase. (1423 aa)
	LOC100695575	Plexin A1a. (1896 aa)
	LOC100704287	Sema domain-containing protein; Belongs to the semaphorin family. (830 aa)
	LOC100693707	Plexin b1a. (2208 aa)
	sema4g	Uncharacterized protein; Belongs to the semaphorin family. (882 aa)
	sema5b	Sema domain-containing protein. (1103 aa)
	plxna4	Plexin A4. (1910 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3JQ94_ORENI	I3KFN3_ORENI	ENSONIP00000056006	ENSONIP00000019928	Plexin b2b.	Uncharacterized protein; Belongs to the semaphorin family.	0.448
I3JQ94_ORENI	LOC100693140	ENSONIP00000056006	ENSONIP00000059408	Plexin b2b.	Sema domain-containing protein; Belongs to the semaphorin family.	0.461
I3JQ94_ORENI	LOC100694323	ENSONIP00000056006	ENSONIP00000037145	Plexin b2b.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	0.462
I3JQ94_ORENI	LOC100697755	ENSONIP00000056006	ENSONIP00000003209	Plexin b2b.	Si:ch211-129c21.1; Belongs to the semaphorin family.	0.623
I3JQ94_ORENI	LOC100701740	ENSONIP00000056006	ENSONIP00000005149	Plexin b2b.	Macrophage stimulating 1 receptor a.	0.514
I3JQ94_ORENI	LOC100703109	ENSONIP00000056006	ENSONIP00000019119	Plexin b2b.	Sema domain-containing protein.	0.586
I3JQ94_ORENI	LOC100703221	ENSONIP00000056006	ENSONIP00000035069	Plexin b2b.	Sema domain-containing protein; Belongs to the semaphorin family.	0.461
I3JQ94_ORENI	LOC100703339	ENSONIP00000056006	ENSONIP00000024537	Plexin b2b.	Sema domain-containing protein; Belongs to the semaphorin family.	0.623
I3JQ94_ORENI	LOC100704287	ENSONIP00000056006	ENSONIP00000075655	Plexin b2b.	Sema domain-containing protein; Belongs to the semaphorin family.	0.461
I3JQ94_ORENI	LOC100704625	ENSONIP00000056006	ENSONIP00000008387	Plexin b2b.	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E; Belongs to the semaphorin family.	0.446
I3JQ94_ORENI	LOC100705693	ENSONIP00000056006	ENSONIP00000008441	Plexin b2b.	Si:ch211-113g11.6; Belongs to the semaphorin family.	0.507
I3JQ94_ORENI	LOC100706063	ENSONIP00000056006	ENSONIP00000004954	Plexin b2b.	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D; Belongs to the semaphorin family.	0.446
I3JQ94_ORENI	LOC100709840	ENSONIP00000056006	ENSONIP00000012872	Plexin b2b.	Semaphorin 4e; Belongs to the semaphorin family.	0.623
I3JQ94_ORENI	LOC100710107	ENSONIP00000056006	ENSONIP00000030550	Plexin b2b.	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba; Belongs to the semaphorin family.	0.446
I3JQ94_ORENI	LOC100710688	ENSONIP00000056006	ENSONIP00000034268	Plexin b2b.	Uncharacterized protein; Belongs to the semaphorin family.	0.448
I3JQ94_ORENI	LOC102083175	ENSONIP00000056006	ENSONIP00000002657	Plexin b2b.	Uncharacterized protein; Belongs to the semaphorin family.	0.461
I3JQ94_ORENI	SEMA4D	ENSONIP00000056006	ENSONIP00000030606	Plexin b2b.	Semaphorin 4D; Belongs to the semaphorin family.	0.623
I3JQ94_ORENI	SEMA4F	ENSONIP00000056006	ENSONIP00000057397	Plexin b2b.	Sema domain-containing protein; Belongs to the semaphorin family.	0.448
I3JQ94_ORENI	met	ENSONIP00000056006	ENSONIP00000080477	Plexin b2b.	MET proto-oncogene, receptor tyrosine kinase.	0.514
I3JQ94_ORENI	mst1r	ENSONIP00000056006	ENSONIP00000025557	Plexin b2b.	Macrophage stimulating 1 receptor b.	0.514