4 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps27a	Ribosomal protein S27a. (156 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	usp14	Ubiquitin carboxyl-terminal hydrolase. (544 aa)
	ubfd1	Ubiquitin family domain containing 1. (292 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rps27a	uba52	ENSONIP00000020250	ENSONIP00000016035	Ribosomal protein S27a.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
rps27a	ubfd1	ENSONIP00000020250	ENSONIP00000056783	Ribosomal protein S27a.	Ubiquitin family domain containing 1.	0.862
rps27a	usp14	ENSONIP00000020250	ENSONIP00000043012	Ribosomal protein S27a.	Ubiquitin carboxyl-terminal hydrolase.	0.960
uba52	rps27a	ENSONIP00000016035	ENSONIP00000020250	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.999
uba52	ubfd1	ENSONIP00000016035	ENSONIP00000056783	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin family domain containing 1.	0.860
uba52	usp14	ENSONIP00000016035	ENSONIP00000043012	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin carboxyl-terminal hydrolase.	0.960
ubfd1	rps27a	ENSONIP00000056783	ENSONIP00000020250	Ubiquitin family domain containing 1.	Ribosomal protein S27a.	0.862
ubfd1	uba52	ENSONIP00000056783	ENSONIP00000016035	Ubiquitin family domain containing 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.860
usp14	rps27a	ENSONIP00000043012	ENSONIP00000020250	Ubiquitin carboxyl-terminal hydrolase.	Ribosomal protein S27a.	0.960
usp14	uba52	ENSONIP00000043012	ENSONIP00000016035	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.960