6 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100693141	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (550 aa)
	LOC100710668	Uncharacterized protein. (618 aa)
	atp5f1a	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (578 aa)
	LOC100709974	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (570 aa)
	atp6v1a	ATPase H+ transporting V1 subunit A. (618 aa)
	ATP6V1B2	ATPase H+ transporting V1 subunit B2. (539 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6V1B2	LOC100693141	ENSONIP00000073370	ENSONIP00000052845	ATPase H+ transporting V1 subunit B2.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.741
ATP6V1B2	LOC100709974	ENSONIP00000073370	ENSONIP00000052384	ATPase H+ transporting V1 subunit B2.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.874
ATP6V1B2	LOC100710668	ENSONIP00000073370	ENSONIP00000006476	ATPase H+ transporting V1 subunit B2.	Uncharacterized protein.	0.985
ATP6V1B2	atp5f1a	ENSONIP00000073370	ENSONIP00000044896	ATPase H+ transporting V1 subunit B2.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.874
ATP6V1B2	atp6v1a	ENSONIP00000073370	ENSONIP00000078635	ATPase H+ transporting V1 subunit B2.	ATPase H+ transporting V1 subunit A.	0.985
LOC100693141	ATP6V1B2	ENSONIP00000052845	ENSONIP00000073370	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATPase H+ transporting V1 subunit B2.	0.741
LOC100693141	LOC100709974	ENSONIP00000052845	ENSONIP00000052384	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.998
LOC100693141	LOC100710668	ENSONIP00000052845	ENSONIP00000006476	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.664
LOC100693141	atp5f1a	ENSONIP00000052845	ENSONIP00000044896	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.998
LOC100693141	atp6v1a	ENSONIP00000052845	ENSONIP00000078635	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATPase H+ transporting V1 subunit A.	0.664
LOC100709974	ATP6V1B2	ENSONIP00000052384	ENSONIP00000073370	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATPase H+ transporting V1 subunit B2.	0.874
LOC100709974	LOC100693141	ENSONIP00000052384	ENSONIP00000052845	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.998
LOC100709974	LOC100710668	ENSONIP00000052384	ENSONIP00000006476	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.766
LOC100709974	atp5f1a	ENSONIP00000052384	ENSONIP00000044896	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.900
LOC100709974	atp6v1a	ENSONIP00000052384	ENSONIP00000078635	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATPase H+ transporting V1 subunit A.	0.766
LOC100710668	ATP6V1B2	ENSONIP00000006476	ENSONIP00000073370	Uncharacterized protein.	ATPase H+ transporting V1 subunit B2.	0.985
LOC100710668	LOC100693141	ENSONIP00000006476	ENSONIP00000052845	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.664
LOC100710668	LOC100709974	ENSONIP00000006476	ENSONIP00000052384	Uncharacterized protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.766
LOC100710668	atp5f1a	ENSONIP00000006476	ENSONIP00000044896	Uncharacterized protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.766
LOC100710668	atp6v1a	ENSONIP00000006476	ENSONIP00000078635	Uncharacterized protein.	ATPase H+ transporting V1 subunit A.	0.900