(14 nodes) Cysteine peptidase, histidine active site network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TINAGL1	Tubulointerstitial nephritis antigen like 1; Belongs to the peptidase C1 family. (480 aa)
	LOC100705351	Uncharacterized protein; Belongs to the peptidase C1 family. (334 aa)
	LOC100705613	Cathepsin F; Belongs to the peptidase C1 family. (507 aa)
	ctsh	Cathepsin H; Belongs to the peptidase C1 family. (324 aa)
	LOC100705087	Uncharacterized protein; Belongs to the peptidase C1 family. (342 aa)
	LOC100707845	Cathepsin Ba; Belongs to the peptidase C1 family. (334 aa)
	LOC100703974	Cathepsin L1-like protein; Belongs to the peptidase C1 family. (354 aa)
	I3K9F7_ORENI	Uncharacterized protein; Belongs to the peptidase C1 family. (393 aa)
	LOC100702144	Uncharacterized protein; Belongs to the peptidase C1 family. (330 aa)
	LOC100690911	Cathepsin S, ortholog 1; Belongs to the peptidase C1 family. (395 aa)
	LOC100704278	Uncharacterized protein; Belongs to the peptidase C1 family. (346 aa)
	LOC100705720	Cathepsin L.1; Belongs to the peptidase C1 family. (339 aa)
	LOC100711989	Cathepsin 12; Belongs to the peptidase C1 family. (352 aa)
	ctso	Cathepsin O; Belongs to the peptidase C1 family. (368 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3K9F7_ORENI	LOC100705613	ENSONIP00000042525	ENSONIP00000076008	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin F; Belongs to the peptidase C1 family.	0.475
I3K9F7_ORENI	ctso	ENSONIP00000042525	ENSONIP00000001451	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin O; Belongs to the peptidase C1 family.	0.448
LOC100690911	LOC100705613	ENSONIP00000027949	ENSONIP00000076008	Cathepsin S, ortholog 1; Belongs to the peptidase C1 family.	Cathepsin F; Belongs to the peptidase C1 family.	0.540
LOC100690911	LOC100707845	ENSONIP00000027949	ENSONIP00000066580	Cathepsin S, ortholog 1; Belongs to the peptidase C1 family.	Cathepsin Ba; Belongs to the peptidase C1 family.	0.479
LOC100690911	ctso	ENSONIP00000027949	ENSONIP00000001451	Cathepsin S, ortholog 1; Belongs to the peptidase C1 family.	Cathepsin O; Belongs to the peptidase C1 family.	0.452
LOC100702144	LOC100705613	ENSONIP00000031986	ENSONIP00000076008	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin F; Belongs to the peptidase C1 family.	0.441
LOC100702144	LOC100707845	ENSONIP00000031986	ENSONIP00000066580	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin Ba; Belongs to the peptidase C1 family.	0.432
LOC100702144	ctso	ENSONIP00000031986	ENSONIP00000001451	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin O; Belongs to the peptidase C1 family.	0.424
LOC100703974	LOC100705613	ENSONIP00000059173	ENSONIP00000076008	Cathepsin L1-like protein; Belongs to the peptidase C1 family.	Cathepsin F; Belongs to the peptidase C1 family.	0.470
LOC100703974	LOC100707845	ENSONIP00000059173	ENSONIP00000066580	Cathepsin L1-like protein; Belongs to the peptidase C1 family.	Cathepsin Ba; Belongs to the peptidase C1 family.	0.464
LOC100703974	ctso	ENSONIP00000059173	ENSONIP00000001451	Cathepsin L1-like protein; Belongs to the peptidase C1 family.	Cathepsin O; Belongs to the peptidase C1 family.	0.449
LOC100704278	LOC100705613	ENSONIP00000006344	ENSONIP00000076008	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin F; Belongs to the peptidase C1 family.	0.464
LOC100704278	LOC100707845	ENSONIP00000006344	ENSONIP00000066580	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin Ba; Belongs to the peptidase C1 family.	0.480
LOC100704278	ctso	ENSONIP00000006344	ENSONIP00000001451	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin O; Belongs to the peptidase C1 family.	0.431
LOC100705087	LOC100705613	ENSONIP00000066931	ENSONIP00000076008	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin F; Belongs to the peptidase C1 family.	0.465
LOC100705087	LOC100707845	ENSONIP00000066931	ENSONIP00000066580	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin Ba; Belongs to the peptidase C1 family.	0.479
LOC100705087	ctso	ENSONIP00000066931	ENSONIP00000001451	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin O; Belongs to the peptidase C1 family.	0.434
LOC100705351	LOC100705613	ENSONIP00000078039	ENSONIP00000076008	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin F; Belongs to the peptidase C1 family.	0.462
LOC100705351	LOC100707845	ENSONIP00000078039	ENSONIP00000066580	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin Ba; Belongs to the peptidase C1 family.	0.473
LOC100705351	ctso	ENSONIP00000078039	ENSONIP00000001451	Uncharacterized protein; Belongs to the peptidase C1 family.	Cathepsin O; Belongs to the peptidase C1 family.	0.430