STRINGSTRING
Sec13 Sec13 gemin8 gemin8 nup58 nup58 ddx20 ddx20 Gemin6 Gemin6 snrpe snrpe snrpd1 snrpd1 Snrpf Snrpf clns1a clns1a nup133 nup133 Snrpg Snrpg nup160 nup160 rae1 rae1 nup93 nup93 nup210 nup210 snrpb snrpb snrpd2 snrpd2 NUP54 NUP54 nup37 nup37 LOC100692890 LOC100692890 nup42 nup42 seh1l seh1l LOC100698882 LOC100698882 nup85 nup85 gemin2 gemin2 nup88 nup88 wdr77 wdr77 ndc1 ndc1 nup107 nup107 LOC100696737 LOC100696737 aaas aaas LOC100694797 LOC100694797 gemin5 gemin5 nup35 nup35 gemin4 gemin4 prmt5 prmt5 NUP214 NUP214 nup155 nup155 snupn snupn nup205 nup205 tpr tpr nup62 nup62 nup50 nup50 nup188 nup188 tgs1 tgs1 nup43 nup43 snrpd3 snrpd3 nup153 nup153
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sec13SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (326 aa)
gemin8Gem (nuclear organelle) associated protein 8. (209 aa)
nup58Nucleoporin 58. (599 aa)
ddx20DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (827 aa)
Gemin6Gem (nuclear organelle) associated protein 6. (82 aa)
snrpeSmall nuclear ribonucleoprotein E. (92 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (110 aa)
SnrpfSmall nuclear ribonucleoprotein F. (85 aa)
clns1aChloride channel, nucleotide-sensitive, 1A. (244 aa)
nup133Nucleoporin 133. (1135 aa)
SnrpgSmall nuclear ribonucleoprotein G. (76 aa)
nup160Nucleoporin 160. (1399 aa)
rae1Ribonucleic acid export 1. (398 aa)
nup93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
nup210Nucleoporin 210. (1886 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (256 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
NUP54Nucleoporin 54. (621 aa)
nup37Nucleoporin 37. (325 aa)
LOC100692890RAN binding protein 2. (3035 aa)
nup42Nucleoporin 42. (439 aa)
seh1lSEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (415 aa)
LOC100698882Survival of motor neuron 1, telomeric. (282 aa)
nup85Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (652 aa)
gemin2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (264 aa)
nup88Nucleoporin 88. (719 aa)
wdr77WD_REPEATS_REGION domain-containing protein. (334 aa)
ndc1NDC1 transmembrane nucleoporin. (666 aa)
nup107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (920 aa)
LOC100696737POM121 transmembrane nucleoporin. (1177 aa)
aaasAchalasia, adrenocortical insufficiency, alacrimia. (520 aa)
LOC100694797Translocated promoter region a, nuclear basket protein. (2505 aa)
gemin5Gem (nuclear organelle) associated protein 5. (1466 aa)
nup35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (294 aa)
gemin4Gem (nuclear organelle) associated protein 4. (1118 aa)
prmt5Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (635 aa)
NUP214Nucleoporin 214. (1690 aa)
nup155Nucleoporin 155. (1365 aa)
snupnSnurportin-1; Functions as an U snRNP-specific nuclear import adapter. Involved in the trimethylguanosine (m3G)-cap-dependent nuclear import of U snRNPs. Binds specifically to the terminal m3G-cap U snRNAs. Belongs to the snurportin family. (373 aa)
nup205Nucleoporin 205. (1992 aa)
tprTranslocated promoter region b, nuclear basket protein. (2364 aa)
nup62Nsp1_C domain-containing protein. (559 aa)
nup50Nucleoporin 50. (468 aa)
nup188Nucleoporin 188. (1746 aa)
tgs1LYN proto-oncogene, Src family tyrosine kinase. (796 aa)
nup43Nucleoporin 43. (372 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
nup153Nucleoporin 153. (1529 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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