13 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sqstm1	Sequestosome 1. (436 aa)
	LOC100691708	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (305 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (318 aa)
	LOC100692989	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family. (296 aa)
	LOC100696124	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family. (232 aa)
	LOC100691074	Nerve growth factor receptor b. (430 aa)
	ENSONIP00000047919	Ubiquitin B. (354 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (757 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (616 aa)
	irak1	Interleukin-1 receptor-associated kinase 1. (752 aa)
	I3IWI9_ORENI	Nerve growth factor receptor a (TNFR superfamily, member 16). (427 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000047919	LOC100691708	ENSONIP00000047919	ENSONIP00000001490	Ubiquitin B.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.784
ENSONIP00000047919	ikbkb	ENSONIP00000047919	ENSONIP00000051922	Ubiquitin B.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.637
ENSONIP00000047919	irak1	ENSONIP00000047919	ENSONIP00000070688	Ubiquitin B.	Interleukin-1 receptor-associated kinase 1.	0.659
ENSONIP00000047919	nfkbia	ENSONIP00000047919	ENSONIP00000024546	Ubiquitin B.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.784
ENSONIP00000047919	rps27a	ENSONIP00000047919	ENSONIP00000020250	Ubiquitin B.	Ribosomal protein S27a.	0.994
ENSONIP00000047919	sqstm1	ENSONIP00000047919	ENSONIP00000000126	Ubiquitin B.	Sequestosome 1.	0.954
ENSONIP00000047919	traf6	ENSONIP00000047919	ENSONIP00000057481	Ubiquitin B.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.959
ENSONIP00000047919	uba52	ENSONIP00000047919	ENSONIP00000016035	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.997
I3IWI9_ORENI	LOC100691074	ENSONIP00000074675	ENSONIP00000041976	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nerve growth factor receptor b.	0.907
I3IWI9_ORENI	LOC100691708	ENSONIP00000074675	ENSONIP00000001490	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.402
I3IWI9_ORENI	LOC100692989	ENSONIP00000074675	ENSONIP00000025849	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	0.998
I3IWI9_ORENI	LOC100696124	ENSONIP00000074675	ENSONIP00000026281	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.	0.936
I3IWI9_ORENI	ikbkb	ENSONIP00000074675	ENSONIP00000051922	Nerve growth factor receptor a (TNFR superfamily, member 16).	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.563
I3IWI9_ORENI	irak1	ENSONIP00000074675	ENSONIP00000070688	Nerve growth factor receptor a (TNFR superfamily, member 16).	Interleukin-1 receptor-associated kinase 1.	0.753
I3IWI9_ORENI	nfkbia	ENSONIP00000074675	ENSONIP00000024546	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.402
I3IWI9_ORENI	sqstm1	ENSONIP00000074675	ENSONIP00000000126	Nerve growth factor receptor a (TNFR superfamily, member 16).	Sequestosome 1.	0.664
I3IWI9_ORENI	traf6	ENSONIP00000074675	ENSONIP00000057481	Nerve growth factor receptor a (TNFR superfamily, member 16).	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.866
LOC100691074	I3IWI9_ORENI	ENSONIP00000041976	ENSONIP00000074675	Nerve growth factor receptor b.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.907
LOC100691074	LOC100692989	ENSONIP00000041976	ENSONIP00000025849	Nerve growth factor receptor b.	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	0.983
LOC100691074	LOC100696124	ENSONIP00000041976	ENSONIP00000026281	Nerve growth factor receptor b.	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.	0.962