STRINGSTRING
ino80 ino80 YY1 YY1 LOC100695822 LOC100695822 xpc xpc actr8 actr8 actr5 actr5 COPS6 COPS6 nfrkb nfrkb ino80c ino80c rad23a rad23a rbx1 rbx1 ino80d ino80d rpap3 rpap3 vwa5b2 vwa5b2 uba52 uba52 ino80b ino80b LOC100692548 LOC100692548 cops2 cops2 LOC100704245 LOC100704245 kxd1 kxd1 RAD23B RAD23B Parp2 Parp2 Ddb2 Ddb2 rps27a rps27a parp3 parp3 ruvbl1 ruvbl1 LOC100703461 LOC100703461 cops4 cops4 Cul4b Cul4b I3JLC5_ORENI I3JLC5_ORENI gps1 gps1 LOC100696643 LOC100696643 wdr76 wdr76 cops8 cops8 mcrs1 mcrs1 cops5 cops5 ENSONIP00000047919 ENSONIP00000047919 tfpt tfpt ino80e ino80e cetn3 cetn3 actb actb cops3 cops3 LOC102083256 LOC102083256 ddb1 ddb1 parp1 parp1 cul4a cul4a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ino80INO80 complex ATPase subunit. (1573 aa)
YY1YY1 transcription factor b. (367 aa)
LOC100695822Centrin 4. (171 aa)
xpcXeroderma pigmentosum, complementation group C. (930 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (643 aa)
actr5Actin related protein 5; Belongs to the actin family. (625 aa)
COPS6COP9 signalosome subunit 6. (316 aa)
nfrkbNuclear factor related to kappaB binding protein. (1274 aa)
ino80cINO80 complex subunit C. (203 aa)
rad23aRAD23 homolog A, nucleotide excision repair protein a. (365 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (107 aa)
ino80dINO80 complex subunit Da. (1005 aa)
rpap3RNA polymerase II associated protein 3. (663 aa)
vwa5b2Von Willebrand factor A domain containing 5B2. (1401 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
ino80bINO80 complex subunit B. (342 aa)
LOC100692548COP9 constitutive photomorphogenic homolog subunit 7A. (268 aa)
cops2COP9 signalosome subunit 2. (438 aa)
LOC100704245Uncharacterized protein. (407 aa)
kxd1KxDL motif containing 1. (184 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (369 aa)
Parp2Poly [ADP-ribose] polymerase. (619 aa)
Ddb2Damage-specific DNA binding protein 2. (443 aa)
rps27aRibosomal protein S27a. (156 aa)
parp3Poly [ADP-ribose] polymerase. (539 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
LOC100703461YY1 transcription factor. (350 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (421 aa)
Cul4bCullin-4B. (869 aa)
I3JLC5_ORENIUncharacterized protein. (506 aa)
gps1G protein pathway suppressor 1. (510 aa)
LOC100696643Proline-, glutamic acid- and leucine-rich protein 1. (530 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (551 aa)
cops8COP9 signalosome subunit 8. (199 aa)
mcrs1Microspherule protein 1. (467 aa)
cops5COP9 signalosome subunit 5. (360 aa)
ENSONIP00000047919Ubiquitin B. (354 aa)
tfptTCF3 fusion partner isoform X3. (220 aa)
ino80eINO80 complex subunit E. (237 aa)
cetn3Centrin 3. (181 aa)
actbUncharacterized protein. (376 aa)
cops3COP9 signalosome subunit 3. (423 aa)
LOC102083256Si:ch73-290k24.6. (849 aa)
ddb1Damage-specific DNA binding protein 1. (1140 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1023 aa)
cul4aCullin 4A; Belongs to the cullin family. (819 aa)
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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