(7 nodes) (2019) Transcriptome Analysis Reveals Common and Differential Response to Low Temperature Exposure Between Tolerant and Sensitive Blue Tilapia (Oreochromis aureus). network (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100704840	Glucose-6-phosphate isomerase; Belongs to the GPI family. (553 aa)
	ATP6	ATP synthase subunit a. (227 aa)
	LOC100534427	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. (351 aa)
	LOC100702997	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (784 aa)
	ald	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family. (363 aa)
	I3KPD3_ORENI	Glucose-6-phosphate isomerase; Belongs to the GPI family. (552 aa)
	I3J820_ORENI	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (264 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3J820_ORENI	I3KPD3_ORENI	ENSONIP00000005010	ENSONIP00000022978	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.963
I3J820_ORENI	LOC100534427	ENSONIP00000005010	ENSONIP00000074038	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.	0.508
I3J820_ORENI	LOC100702997	ENSONIP00000005010	ENSONIP00000043892	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	0.651
I3J820_ORENI	LOC100704840	ENSONIP00000005010	ENSONIP00000003599	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.963
I3J820_ORENI	ald	ENSONIP00000005010	ENSONIP00000025311	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	0.926
I3KPD3_ORENI	I3J820_ORENI	ENSONIP00000022978	ENSONIP00000005010	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	0.963
I3KPD3_ORENI	LOC100534427	ENSONIP00000022978	ENSONIP00000074038	Glucose-6-phosphate isomerase; Belongs to the GPI family.	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.	0.919
I3KPD3_ORENI	LOC100702997	ENSONIP00000022978	ENSONIP00000043892	Glucose-6-phosphate isomerase; Belongs to the GPI family.	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	0.988
I3KPD3_ORENI	LOC100704840	ENSONIP00000022978	ENSONIP00000003599	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.901
I3KPD3_ORENI	ald	ENSONIP00000022978	ENSONIP00000025311	Glucose-6-phosphate isomerase; Belongs to the GPI family.	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	0.964
LOC100534427	I3J820_ORENI	ENSONIP00000074038	ENSONIP00000005010	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	0.508
LOC100534427	I3KPD3_ORENI	ENSONIP00000074038	ENSONIP00000022978	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.919
LOC100534427	LOC100702997	ENSONIP00000074038	ENSONIP00000043892	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	0.421
LOC100534427	LOC100704840	ENSONIP00000074038	ENSONIP00000003599	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.919
LOC100534427	ald	ENSONIP00000074038	ENSONIP00000025311	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	0.887
LOC100702997	I3J820_ORENI	ENSONIP00000043892	ENSONIP00000005010	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	0.651
LOC100702997	I3KPD3_ORENI	ENSONIP00000043892	ENSONIP00000022978	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.988
LOC100702997	LOC100534427	ENSONIP00000043892	ENSONIP00000074038	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.	0.421
LOC100702997	LOC100704840	ENSONIP00000043892	ENSONIP00000003599	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.988
LOC100702997	ald	ENSONIP00000043892	ENSONIP00000025311	ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	0.858