11 items (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100695842	Calpain small subunit 1. (216 aa)
	calml4	Calmodulin-like 4a. (153 aa)
	LOC100701793	Calmodulin-like 4b. (153 aa)
	I3K303_ORENI	Troponin I type 1a (skeletal, slow). (185 aa)
	Mb	Myoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles. (198 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (359 aa)
	MYH6	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1956 aa)
	Fasn	Coiled-coil domain containing 57. (2541 aa)
	LOC100700838	Calpain, small subunit 1 b. (216 aa)
	LOC100696823	Glyceraldehyde-3-phosphate dehydrogenase. (361 aa)
	calm1	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family. (149 aa)

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3K303_ORENI	MYH6	ENSONIP00000018521	ENSONIP00000033809	Troponin I type 1a (skeletal, slow).	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.463
I3K303_ORENI	calm1	ENSONIP00000018521	ENSONIP00000061481	Troponin I type 1a (skeletal, slow).	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.416
LOC100701793	calm1	ENSONIP00000013323	ENSONIP00000061481	Calmodulin-like 4b.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.905
LOC100701793	calml4	ENSONIP00000013323	ENSONIP00000007174	Calmodulin-like 4b.	Calmodulin-like 4a.	0.902
MYH6	I3K303_ORENI	ENSONIP00000033809	ENSONIP00000018521	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Troponin I type 1a (skeletal, slow).	0.463
MYH6	calm1	ENSONIP00000033809	ENSONIP00000061481	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.468
calm1	I3K303_ORENI	ENSONIP00000061481	ENSONIP00000018521	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Troponin I type 1a (skeletal, slow).	0.416
calm1	LOC100701793	ENSONIP00000061481	ENSONIP00000013323	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Calmodulin-like 4b.	0.905
calm1	MYH6	ENSONIP00000061481	ENSONIP00000033809	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.468
calm1	calml4	ENSONIP00000061481	ENSONIP00000007174	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	Calmodulin-like 4a.	0.905
calml4	LOC100701793	ENSONIP00000007174	ENSONIP00000013323	Calmodulin-like 4a.	Calmodulin-like 4b.	0.902
calml4	calm1	ENSONIP00000007174	ENSONIP00000061481	Calmodulin-like 4a.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.905